Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00375 ATGCAAGGGCAGAGAGGTACAGTTGTTTCAATGCCTGAAACCTTAGAATTTGATTGTGGATCTGCATCTGGCAATTCTACTGCGGATCAGCAAATTTGCTGGAATAATGTGAATCCTGCAGAGAACCAAATTCCTGATTATATACTTTCTCCTTGTGATATGAACTCATCCTATGACAATTCTATTATTAATCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGGGAGCCAAGTTCCAGTAATACACCAAATGAGATTAACAATAATGAGCAAAAAAGAGAACTTGGATGGTCATCAACCATTACTGCTGGTGCATTGGCTGGTCCAAGCCTAGAAGAAAGGCGCCTTGAACCAACCAATGCTCTTTCACTAGACAATGTCAATACAGGTCCTATCTACATCTGTAGCCCCAATTCTCATTTGATGTCCCAGAATCTCAACTTAAATGCAGGTTTAGCGGACAGTGGCAGTGATGATAGTCAACATCTGGAGCTCCCTAACTTAAACAAGTCTAGTGGGTCAGCAAACGAGTGTATACCACCTAATGTTGGATCTGGTTCTTTTCTGCTTCCTTCTGGAAATAATGCCTTCCTGGTAGAAGATACTGATGGTAGGCCTAGTTGTTCTCTTGATACTCGGCGGGTCTCTTGTAAACGAAAGGCTGTTGAAGGAAATAATGGACAATCGTCAGATGCTGGGAGTTCTAGCTACAGTCAGCATACAGATGGTAGTGCATGGCACACCATTCCTACTCAGGATAATGCTGGAAGCAGTTCGAGAAGATCTATTCCCTCAGAAGAGGTAAACGCAAGACTTGGCCTGGGTATCGGGGATGAAGCATCTGAAAATGTTTCTGATTCAAAAACTGCAGGAAGCTCAGAAAGCTTTCACAGGAATTTCCGTTTGAGGTTAAATCCTTCAAACCCAGCAAATTCTGTTCCTCCCACCGCATTCTCAACTGGGAGCATGATTAGGCATTCTGGTGTTTCTCCATCCTCTCAAGTATCACAAAGACTTCATTCTGTTAATAATTCTCTGAACTCGAGGTCGGCACCACCGATAGATAATGTGGTTCCTCAAAGCCAGCCACATGTAATCCATGTCCCTGCTTTGCCCAGGAATAGACAATCATTTAGATGGAGTGGTGGTTCTAGCTCCAGAAACATCCATTCATCAAACTCAATTATATCCCCAGCCAGGGATCAGGAGGATGCAAGCTCAAGAAGAATGTCCAGAAATATGTTAGAACATCCAGTCTTTCAACCTGCAACTGATTTAAGAAATTTAGTTCAAAATCCAACAGTTAGAGCTTCAAGTTCAAGTAGTGTAAATTTAAGTATTCCAGGAAATGTTGCTTCATCACGGACTGGATCAAATCCAGCTACCAATCCCTCATCTGCCCCAACTTGGGTTTCTCCTCCTAATCCTCCACAGCATCCACGGAGGTTATCTGAATATGTCCGTCGGTCCTTGTTTTCTCCCAGTTCTGATGCTATTGGAAGTCCAAGCAATAATTATTCTTCCTTGCGCTCTGGTTTTTCTACATCTGAACCAAGGGCGTTATCATCTGGGAGTGGGGCAAACCCGAGATCATCTTCATGGTTGGAGAGGCAAGGAGGTAGTGAATTTGGAATTCCTTATTCACTACGTACTTTGGCTGTTGCAAGTGAAGGAAGTAGTAGACTTGTATCTGAGCTCCACAATGTTTTGGGCCGAATGCGTAGAGGTGGGAACATGCGATTTGAGGATGTTGTGATCCTTGAGCATCAATCATTTCTTTCTGGAATAGCTGATGTTCATGATCGACACGGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGTTGTTGGCTCTGGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAGGAAACCCTATCGAAACTCTTGAAACAGAGAAAGCACTCGGTTGAAAAAGGGTCTGAGACTGATGCAGAACCCTGTTGTGTTTGTCAGGAGGATTATGGTGATGGGAATGATATTGGAACGCTTGATTGTGGCCATGATTTCCATAGCAGCTGTATCAAACAGTGGCTAATGCAAAAGAATCTGTGTCCCATTTGTAAGACAACGGGCTTGGCAACATGA 2124 0.4331 MQGQRGTVVSMPETLEFDCGSASGNSTADQQICWNNVNPAENQIPDYILSPCDMNSSYDNSIINHEWQNLSGWSLGEPSSSNTPNEINNNEQKRELGWSSTITAGALAGPSLEERRLEPTNALSLDNVNTGPIYICSPNSHLMSQNLNLNAGLADSGSDDSQHLELPNLNKSSGSANECIPPNVGSGSFLLPSGNNAFLVEDTDGRPSCSLDTRRVSCKRKAVEGNNGQSSDAGSSSYSQHTDGSAWHTIPTQDNAGSSSRRSIPSEEVNARLGLGIGDEASENVSDSKTAGSSESFHRNFRLRLNPSNPANSVPPTAFSTGSMIRHSGVSPSSQVSQRLHSVNNSLNSRSAPPIDNVVPQSQPHVIHVPALPRNRQSFRWSGGSSSRNIHSSNSIISPARDQEDASSRRMSRNMLEHPVFQPATDLRNLVQNPTVRASSSSSVNLSIPGNVASSRTGSNPATNPSSAPTWVSPPNPPQHPRRLSEYVRRSLFSPSSDAIGSPSNNYSSLRSGFSTSEPRALSSGSGANPRSSSWLERQGGSEFGIPYSLRTLAVASEGSSRLVSELHNVLGRMRRGGNMRFEDVVILEHQSFLSGIADVHDRHGDMRLDVDNMSYEELLALEERIGNVSTGLSEETLSKLLKQRKHSVEKGSETDAEPCCVCQEDYGDGNDIGTLDCGHDFHSSCIKQWLMQKNLCPICKTTGLAT 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00375 707 SUPERFAMILY RING/U-box 649 703 - -
Gma04g00375 707 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 706 - -
Gma04g00375 707 CDD RING-H2_TTC3 659 701 - -
Gma04g00375 707 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 706 IPR045191 GO:0061630
Gma04g00375 707 MobiDBLite consensus disorder prediction 435 467 - -
Gma04g00375 707 MobiDBLite consensus disorder prediction 221 244 - -
Gma04g00375 707 ProSiteProfiles Zinc finger RING-type profile. 660 701 IPR001841 -
Gma04g00375 707 MobiDBLite consensus disorder prediction 435 482 - -
Gma04g00375 707 MobiDBLite consensus disorder prediction 379 402 - -
Gma04g00375 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 704 IPR013083 -
Gma04g00375 707 MobiDBLite consensus disorder prediction 223 244 - -
Gma04g00375 707 SMART ring_2 660 700 IPR001841 -
Gma04g00375 707 MobiDBLite consensus disorder prediction 379 410 - -
Gma04g00375 707 MobiDBLite consensus disorder prediction 274 296 - -
Gma04g00375 707 Pfam Ring finger domain 660 701 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00375 Gma-Chr4 3215459 3221761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00375 217 707 C3H Transcription Factor Family AT2G15530 37.736 7.84e-75 253
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00375 04 3215459 3221761 Gma06g00369 06 3159395 3167037 GST
Gma17g02307 17 41051574 41056759 Gma04g00375 04 3215459 3221761 PCT
Gma04g00375 04 3215459 3221761 Gma17g02307 17 41051574 41056759 PCT