Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00374 ATGGCTGTTCTTCTAGACAACTGTGAAGGCATTTTACTCTCTTTGGACTCACACAAATCAGTGCCAGCTCCTTTCCTCACCAAGACATACCAACTTGTGGACGAACCCACCACAGATCACATTGTTTCTTGGGGCGAAGACGACACCACCTTCGTCGTTTGGCGTCCTCCTGAATTCGCCAGAGACCTTCTTCCTAACTACTTCAAACACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGTTTTAGAAAGATTGTGCCAGACCGATGGGAGTTCGCGAACGAATTCTTCAAGAAGGGAGAGAAACACTTGCTGTGCGAGATCCATAGAAGAAAAACGGCTCAGCCTCAACAAGGAATCATGAACCACCATCACCACCATGCTCATTCTCCGTTGGGAGTCAACGTTAACGTTCCAACTTTCTTTCCCTTCTCCAGCAGAGTCAGCATCTCTACTTCCAACGACTCCGACGACCAATCCAACTGGTGCGACTCGCCGCCACGTGGAGCCACCTCATTGGTGAACGGTGCAGCAGCAGCCAACTACAACACTTCCGTCACGGCGCTTTCGGAGGACAACGAGAGACTCAGAAGAAGCAACAACATGCTCATGTCGGAACTCGCGCACATGAAGAAGCTCTACAATGACATCATCTACTTCGTTCAGAACCATGTCAAGCCAGTGGCTCCAAGCAATTCTTACTCTTCTTCTTTGCTACTATGCAATACACCTTCTGCCACTCCAATAAGTAGTGCCAATAATGTTTCAATGATGCAAAGGCCAATGAACCAGCTTCTGGGGTATTATTCTACTAACCCTAAACAAGGAGCTACACAAATTACTCAACCTCAGACCTATGTTGTGAACTCTCCCACCAACACATCAAGGAGTTCTATAACCATTTTTGAAGGGCCTGCCAGCAGTAACATTAATAGCTGCAAGACCAAGCTTTTTGGGGTGTCGCTGCAGTCCAAGAAAAGGGTGCACCCGGATTGTGGATCTAATCCAGAGACCAACAGGGCTCGTTTGGTTTTGGAAAAAGATGACTTGGGCTTGAATCTCATGCCTCCATCCACTTGTTAG 1092 0.4762 MAVLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDEPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQQGIMNHHHHHAHSPLGVNVNVPTFFPFSSRVSISTSNDSDDQSNWCDSPPRGATSLVNGAAAANYNTSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYSSSLLLCNTPSATPISSANNVSMMQRPMNQLLGYYSTNPKQGATQITQPQTYVVNSPTNTSRSSITIFEGPASSNINSCKTKLFGVSLQSKKRVHPDCGSNPETNRARLVLEKDDLGLNLMPPSTC 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00374 363 Gene3D - 17 116 IPR036388 -
Gma04g00374 363 PANTHER BNAC06G00310D PROTEIN 12 238 - -
Gma04g00374 363 PANTHER BNAC06G00310D PROTEIN 290 362 - -
Gma04g00374 363 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 238 IPR027725 -
Gma04g00374 363 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 290 362 IPR027725 -
Gma04g00374 363 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma04g00374 363 Coils Coil 189 209 - -
Gma04g00374 363 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma04g00374 363 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma04g00374 363 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma04g00374 363 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma04g00374 363 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma04g00374 363 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00374 Gma-Chr4 3197921 3199429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00374 1 362 HSF AT1G46264 55.297 4.88e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gma04g00374 HSF_DNA-bind 7.5e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00374 04 3197921 3199429 Gma04g00374 04 3197921 3199429 ECH
Gma04g00374 04 3197921 3199429 Gma06g00368 06 3140104 3141277 GST
Gma17g02310 17 41107010 41108692 Gma04g00374 04 3197921 3199429 PCT
Gma14g00730 14 7328232 7329864 Gma04g00374 04 3197921 3199429 PCT
Gma04g00374 04 3197921 3199429 Gma17g02310 17 41107010 41108692 PCT
Gma04g00374 04 3197921 3199429 Gma14g00730 14 7328232 7329864 PCT