Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00348 ATGCAACCAACATCGAACGGCTCTGACTCGAAAGCGACGGAGCAGCGGACGCCGCCGCCTCAGCCAGTGGCCGTGCCGCCGCAGTGGATGCCGATGCAATACCCGGCGGCGGCGATGGTAATGCAGCACCACATGATGCCGCCTCAGCATTACGCGCCGCCGCAGCCCTACATGGCCTACCACCAGTACCAGCAGCAGGTGCCGCAAGCGCACCACCTGGGATCCAGCGCCGAGAACAAGACCGTTTGGGTCGGCGATTTGCATCACTGGATGGACGAAAATTATCTCCACCGCTGTTTTGCTTCCACCGGCGAGATTTCCTCCATTAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCACATGGCACAGCTGATAAAGTTTTGCAGAATTATGCTGGGATATTGATGCCTAACACCGAGCAACCGTTCCGCCTGAACTGGGCAACATTTAGCACAGGAGACAAGCGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCATGTTGCATGAAACTTTTACTAATAGATACCCATCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGACGATAATGAGAGGTCTCAGGCTATGACTGAAATGAATGGTGTTTACTGTTCTAGCAGACCTATGCGTATTGGTGCTGCAACTCCTAGGAAAACGTCTGGCTATCAACAAGGAAGTCAGTCAAATGGCACATCCAGCCAATCTGAAGCTGATTCTACAAACACAACTatatttgttggaggacttgaccctaatgttacagctgaagatcttaagcaaccattctcccagtatggtgagatagtctctgtcaaaatacctgttggaaaaggatgtggttttgtacaatttgCAAACAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAATGGGACAACGATTGGCAAGCAAATGGTTCGTCTTTCATGGGGCCGCAGTCCAGCAAATAAGCAGTTTAGAGCAGATTTTGGCAATGCTTGGAGTGGGGCGTATTATGGAGGGCCTGTTTATGATGGTTATGGATATGCTTTGCCACCACCTTATGACCCAAGCATATATGCTGCTGCTGCTTATGGGGCTTACCCTATTTATGGAGGATACCAACAGCAAGTAAGCTGA 1230 0.4366 MQPTSNGSDSKATEQRTPPPQPVAVPPQWMPMQYPAAAMVMQHHMMPPQHYAPPQPYMAYHQYQQQVPQAHHLGSSAENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTADKVLQNYAGILMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFTNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKTSGYQQGSQSNGTSSQSEADSTNTTIFVGGLDPNVTAEDLKQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQMVRLSWGRSPANKQFRADFGNAWSGAYYGGPVYDGYGYALPPPYDPSIYAAAAYGAYPIYGGYQQQVS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00348 409 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 22 409 - -
Gma04g00348 409 MobiDBLite consensus disorder prediction 253 274 - -
Gma04g00348 409 CDD RRM3_NGR1_NAM8_like 277 348 - -
Gma04g00348 409 Gene3D - 79 159 IPR012677 -
Gma04g00348 409 CDD RRM2_SECp43_like 172 251 - -
Gma04g00348 409 SUPERFAMILY RNA-binding domain, RBD 156 267 IPR035979 GO:0003676
Gma04g00348 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 175 244 IPR000504 GO:0003723
Gma04g00348 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 149 IPR000504 GO:0003723
Gma04g00348 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 341 IPR000504 GO:0003723
Gma04g00348 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 278 350 IPR000504 GO:0003723
Gma04g00348 409 MobiDBLite consensus disorder prediction 249 274 - -
Gma04g00348 409 MobiDBLite consensus disorder prediction 1 28 - -
Gma04g00348 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 173 252 IPR000504 GO:0003723
Gma04g00348 409 SUPERFAMILY RNA-binding domain, RBD 39 162 IPR035979 GO:0003676
Gma04g00348 409 Gene3D - 255 357 IPR012677 -
Gma04g00348 409 SUPERFAMILY RNA-binding domain, RBD 268 378 IPR035979 GO:0003676
Gma04g00348 409 CDD RRM1_SECp43_like 81 161 - -
Gma04g00348 409 Gene3D - 172 248 IPR012677 -
Gma04g00348 409 MobiDBLite consensus disorder prediction 1 17 - -
Gma04g00348 409 SMART rrm1_1 174 248 IPR000504 GO:0003723
Gma04g00348 409 SMART rrm1_1 81 156 IPR000504 GO:0003723
Gma04g00348 409 SMART rrm1_1 279 346 IPR000504 GO:0003723
Gma04g00348 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 160 IPR000504 GO:0003723
Gma04g00348 409 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 22 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00348 Gma-Chr4 2991053 2997140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00348 277 364 Eukaryotic Initiation Factors Gene Family AT4G34110 32.632 6.18e-06 46.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00348 04 2991053 2997140 Gma04g00348 04 2991053 2997140 ECH
Gma04g00348 04 2991053 2997140 Gma06g00336 06 2930572 2938615 GST
Gma17g02344 17 41443049 41447808 Gma04g00348 04 2991053 2997140 PCT
Gma14g00695 14 6977901 6981585 Gma04g00348 04 2991053 2997140 PCT
Gma04g00348 04 2991053 2997140 Gma17g02344 17 41443049 41447808 PCT
Gma04g00348 04 2991053 2997140 Gma14g00695 14 6977901 6981585 PCT