Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00344 ATGGAAGAAATGAACAGAAGCTCCTCCTCCACTTCCTCTTCCTCTCACTGTTGCTCTTTAGAGTCCAACCATAGGAGCCCCAACAAGCCAGACAGAATCAAAGGCCCATGGAGCGCCCAAGAGGATCGGATCCTGACACGACTAGTCGAACAATACGGCCCTCGAAACTGGTCCCTCATCAGCCGCTACATTAAGGGCAGGTCCGGCAAATCGTGCCGGCTGCGGTGGTGCAATCAGCTGAGCCCCACCGTGGAGCACCGCCCCTTCTCGACCCAAGAGGACGAGACCATCATCGCTGCCCATGCCCGGTACGGTAACAGGTGGGCCACCATAGCCCGATTATTACCGGGCCGAACCGATAACGCCGTTAAGAACCACTGGAACTCCACGCTCAAGCGCAGAGCCAAGGGTATTAACGTTAATGTTAATGATGCCGACAACGAGGATGACCCGTTGACCGCATTGACTCTTGCTCCTCCCGGTATTGCTAATGCCACTTTGACCGAAGACGCCGTACCGGACCACCGGGCCTCGCCGGAGAGTGCGGCGGAGGGGTTTTGGGATATGATGAGGGATGTGATCGCGAGGGAAGTGAGGGAATATGTGTCTTCTAATTTTTCTGATAATAACTAG 633 0.5513 MEEMNRSSSSTSSSSHCCSLESNHRSPNKPDRIKGPWSAQEDRILTRLVEQYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSTQEDETIIAAHARYGNRWATIARLLPGRTDNAVKNHWNSTLKRRAKGINVNVNDADNEDDPLTALTLAPPGIANATLTEDAVPDHRASPESAAEGFWDMMRDVIAREVREYVSSNFSDNN 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00344 210 SMART sant 85 133 IPR001005 -
Gma04g00344 210 SMART sant 33 82 IPR001005 -
Gma04g00344 210 Gene3D - 33 85 - -
Gma04g00344 210 ProSiteProfiles Myb-like domain profile. 29 80 IPR001005 -
Gma04g00344 210 SUPERFAMILY Homeodomain-like 31 127 IPR009057 -
Gma04g00344 210 MobiDBLite consensus disorder prediction 1 37 - -
Gma04g00344 210 CDD SANT 88 131 IPR001005 -
Gma04g00344 210 Pfam Myb-like DNA-binding domain 37 95 - -
Gma04g00344 210 MobiDBLite consensus disorder prediction 1 24 - -
Gma04g00344 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 135 IPR017930 -
Gma04g00344 210 PANTHER MYB PROTEIN-RELATED 1 198 - -
Gma04g00344 210 PANTHER MYB TRANSCRIPTION FACTOR 1 198 - -
Gma04g00344 210 Gene3D - 87 151 - -
Gma04g00344 210 CDD SANT 36 78 IPR001005 -
Gma04g00344 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 84 IPR017930 -
Gma04g00344 210 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00344 Gma-Chr4 2940278 2941338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00344 31 150 MYB Transcription Factor Family AT3G50060 70.000 2.70e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma04g00344 Myb_DNA-bind_6 1.7e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00344 04 2940278 2941338 Gma04g00344 04 2940278 2941338 ECH
Gma04g00344 04 2940278 2941338 Gma06g00331 06 2873111 2874149 GST
Gma17g02348 17 41493510 41494396 Gma04g00344 04 2940278 2941338 PCT
Gma04g00344 04 2940278 2941338 Gma17g02348 17 41493510 41494396 PCT