Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00323 ATGGAGCTAACCGTTCGGTGCACCTCATGCGCGCTGTCCAGATTTCATTGCAAACTTCGATTCGCCGTGGTTGTTTTCGAGATTATATTGATATTGGCATGGGTGGAGGCCCACAATGCAAAGCCCCAGGAACACCAACTTCAATGGGGAGGCTTGGAGAGGAATACTGAGAATATTGCCTCTCACTCTTGCATACACGACCAGATTCTTGATCAGAGGAAGCGACCTGGTCGCAAGGTGTATTCAATTACCCCACAGGTTTATGAGCCTGTTCGCTTGAAACACCTTCAGCATAAAGGTAGGACATTACTTGATGTGCCAACATCATCAAGGCCTCAAGAGGATGCAAAGAAGCCTATTAGGATATATCTAAATTATGATGCTGTTGGTCACTCCCCTGACAGGGATTGTCGAGCAATTGGCAATATTGTCAAACTTGGGGAGCCTCCCATGACTTCTCCTGGTTTTCCTTCTTGCGACCCCCATGGTAATCCTCCAATCTTAGGTGATTGTTGGTATAACTGCACTTCTGAAGATATCTCCGGAGATGACAAAAAACGTCGCCTTCGTAAGGCATTAGGTCAGACAGCTGACTGGTTTAGGAGAGCATTGGCTGTTGAGCCTGTCAAGGGGAACCTGCGGTTAAGTGGATATTCTGCTTGTGGACAAGATGGAGGTGTGCAACTTCCTCGTGGATATATTGAGGAGGGTGTCTCTGATGCCGACTTGGTTCTTTTGGTGACTACAAGACCTACAACTGGAAGTACACTTGCCTGGGCGGTGGCATGTGAACGAGATCAATGGGGTCGTGCTATAGCTGGACATGTTAATGTTGCGCCTCGCCATTTGACTGCTGAGGCAGAGACTTTGCTTTCAGCCACTCTGATACATGAGGTTATGCATGTTCTTGGTTTTGATCCACATGCCTTTGCTCATTTTAGAGATGAAAGGAAAAGACGGCGTAATCAGGTTACTGAACAAGTTATGGATGAAAAGCTTGGACGAATGGTAACACGTGTGGTGCTTCCTCGTGTTGTCATGCATTCTCGATATCATTATGCGGCTTTCTCAGGAAATTTTTCTGGTTTAGAGCTGGAAGATGGTGGAGGACGTGGCACATCAGGGTCTCACTGGGAAAAAAGGCTTCTTATGAATGAGATTATGACTGGTTCTGTGGATACAAGATCTGTTGTTTCAAAAATGACATTAGCTCTATTAGAAGATAGTGGATGGTACAAGGCCAATTATAGTATGGCAGACCATCTTGATTGGGGTCGCAACCAAGGTACTGAGTTTGTTACCTCCCCTTGCAATCTATGGAAGGGAGCCTATCGTTGCAACACAACACTGTTTTCTGGTTGTACATATAACAGGGAGGCAGAGGGATACTGCCCCATCCTAACTTATAGTGGAGATCTCCCTCAGTGGGCTCGGTATTTTCCACAAGCTAATAAGGGTGGACAATCCTCATTGGCTGATTATTGCACTTACTTTGTTGCTTACTCTGATGGTTCGTGTACAGACACTAACAGTGCACGAGCACCTGACAGAATGCTAGGTGAAGTCAGAGGAAGTAACTCTAGGTGTATGGCTTCATCACTAGTACGCACAGGCTTTGTACGAGGTTCTATGACCCAGGGAAATGGTTGTTATCAGCACAGGTGTATCAACAATTCTTTAGAGGTTGCTGTGGATGGTATCTGGAAAGTGTGTCCTCAAGCTGGTGGACCCATTCAGTTCCCTGGCTTTAATGGTGAATTAATCTGCCCTGCTTACCCCGAGCTCTGTAACACTGACCCAGTAGCTGTGTCTGGTCAATGCCCTAATTCATGTAATTCCAATGGAGATTGTGTTGATGGAAAATGCCGATGCTTTCTTGGATTTCATGGGAATGATTGCAGTAGACGTTCCTGCCCCAGCAAATGCAATGGCAATGGAGTGTGCCTTTCCAATGGGATTTGTGAATGTAAACCTGGCTACACTGGCATTGACTGCTCCACTGCTGTGTGTGATGAGCAATGCAGCCTTCATGGTGGGGTTTGTGATAATGGAGTTTGTGAATTCCGCTGTTCTGACTATGCGGGATACACATGCCAGAATAGCTCCATGCTCCTGCCTAGCCTTTCGGTGTGCAAAAATGTGCCTGGAAATGATATTTCTGGACAGCATTGTGCACCCAGTGAGCCTAGCATACTACAGCAGCTGGAAGAGGTTGTTGTCATACCCAACTACCACCGACTATTCCCTGGTGGTGCTAGAAAATTATTTAATATATTTGGCAGCTCCTACTGTGACGAGACTGCTAAACGGCTTGCCTGCTGGATCTCAATCCAGAAGTGTGACAAGGATGGAGACAACAGGCTTCGAGTGTGCCATTCTGCATGCCAATCTTATAATCTAGCATGTGGAGCTTCTCTTGACTGCTCTGATCAGACGCTTTTCAGCAGTGACGGGGAAGGGGAGGGTCAATGCACCGGCTCGGGTGAGACGAAATTGTCATGGTTTAATCGTCTGCGAAGCAGTTTTTCTTTGAGAAATAGTTCCTTGAAAGGAATATCTGTAAAATATAGGCAGCTATAA 2580 0.4624 MELTVRCTSCALSRFHCKLRFAVVVFEIILILAWVEAHNAKPQEHQLQWGGLERNTENIASHSCIHDQILDQRKRPGRKVYSITPQVYEPVRLKHLQHKGRTLLDVPTSSRPQEDAKKPIRIYLNYDAVGHSPDRDCRAIGNIVKLGEPPMTSPGFPSCDPHGNPPILGDCWYNCTSEDISGDDKKRRLRKALGQTADWFRRALAVEPVKGNLRLSGYSACGQDGGVQLPRGYIEEGVSDADLVLLVTTRPTTGSTLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHEVMHVLGFDPHAFAHFRDERKRRRNQVTEQVMDEKLGRMVTRVVLPRVVMHSRYHYAAFSGNFSGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYKANYSMADHLDWGRNQGTEFVTSPCNLWKGAYRCNTTLFSGCTYNREAEGYCPILTYSGDLPQWARYFPQANKGGQSSLADYCTYFVAYSDGSCTDTNSARAPDRMLGEVRGSNSRCMASSLVRTGFVRGSMTQGNGCYQHRCINNSLEVAVDGIWKVCPQAGGPIQFPGFNGELICPAYPELCNTDPVAVSGQCPNSCNSNGDCVDGKCRCFLGFHGNDCSRRSCPSKCNGNGVCLSNGICECKPGYTGIDCSTAVCDEQCSLHGGVCDNGVCEFRCSDYAGYTCQNSSMLLPSLSVCKNVPGNDISGQHCAPSEPSILQQLEEVVVIPNYHRLFPGGARKLFNIFGSSYCDETAKRLACWISIQKCDKDGDNRLRVCHSACQSYNLACGASLDCSDQTLFSSDGEGEGQCTGSGETKLSWFNRLRSSFSLRNSSLKGISVKYRQL 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00323 859 Pfam EGF-like domain 638 665 IPR013111 -
Gma04g00323 859 Gene3D Leishmanolysin domain 4 501 594 - -
Gma04g00323 859 ProSitePatterns EGF-like domain signature 2. 654 665 IPR000742 -
Gma04g00323 859 Gene3D - 113 302 - -
Gma04g00323 859 ProSitePatterns EGF-like domain signature 1. 654 665 IPR000742 -
Gma04g00323 859 PRINTS Leishmanolysin (M8) metalloprotease family signature 247 276 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Gma04g00323 859 PRINTS Leishmanolysin (M8) metalloprotease family signature 400 429 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Gma04g00323 859 PANTHER METALLOENDOPEPTIDASE/ZINC ION-BINDING PROTEIN 1 831 - -
Gma04g00323 859 Gene3D - 595 637 - -
Gma04g00323 859 Gene3D Laminin 638 668 - -
Gma04g00323 859 Gene3D Leishmanolysin domain 3 440 499 - -
Gma04g00323 859 SMART egf_5 637 666 IPR000742 -
Gma04g00323 859 SMART egf_5 595 634 IPR000742 -
Gma04g00323 859 ProSiteProfiles EGF-like domain profile. 634 666 IPR000742 -
Gma04g00323 859 Pfam Leishmanolysin 173 598 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Gma04g00323 859 PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE 1 831 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Gma04g00323 859 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 115 603 - -
Gma04g00323 859 Gene3D Leishmanolysin , domain 2 312 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00323 Gma-Chr4 2771247 2779357 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00323 04 2771247 2779357 Gma04g00323 04 2771247 2779357 ECH
Gma17g02373 17 41781935 41791202 Gma04g00323 04 2771247 2779357 PCT
Gma14g00663 14 6514331 6522543 Gma04g00323 04 2771247 2779357 PCT
Gma04g00323 04 2771247 2779357 Gma17g02373 17 41781935 41791202 PCT
Gma04g00323 04 2771247 2779357 Gma14g00663 14 6514331 6522543 PCT