Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00286 ATGGATTCAACTTGTGCAATCCTGAGTGGCCGCAATCTAGCTAAAGTTTGTGAGGGAATTGGAAGAAACAGAAGAAGTGGCTTCTGGGGTGAGAGTACGAGGCGAAGTGTGAACACAAGGTTTTTGAGTGTTCAATCATGGAAGACTTCACGTACCAGTAGGAATCTTAGAAACTCCAAGCCTGGAAGTGGAATTGCACACGCTGTTCTCACATCAGACATTAACGAAGATTCGATGGCATTTCAAGGGGTACCCACTTTTGAAAAACCCGAAGTGGACCCAAAAAGTGTGGCTTCCATCATATTGGGTGGAGGTGCAGGAACTCGACTCTTTCCTCTTACTGGCAGAAGAGCCAAGCCTGCGGTTCCAATTGGCGGGTGTTATAGACTCATAGATATCCCCATGAGCAATTGCATCAATAGTGGCATCAGAAAAATATTCATTTTGACGCAGTTCAATTCTTTCTCTCTCAACCGCCACCTGTCCCGTGCATACAGCTTCGGAAATGGAATTACTTTTGGAGATGGGTTTGTGGAGGTCTTGGCAGCTACTCAAACACCTGGAGAGGCCGGGAAGAAGTGGTTCCAAGGGACCGCCGATGCTGTAAGACAATTTATATGGGTTTTTGAGGATGCCAAGAACAAGAATGTTGAGCATATATTGATACTTTCTGGTGATCATCTTTACCGAATGGACTACATGAACTTTGTACAGAGACATGTTGACACAAATGCTGATATCACAGTTTCATGTGTACCCATGGATGACAGTCGGGCATCAGACTATGGACTGATGAAAATTGACAAAACAGGACGGATTATACAGTTTGCAGAAAAACCTAAGGGATCAGATCTAAAGGCAATGCGTGTTGACACCACTCTTCTAGGGTTATCGCCACAAGAAGCAGAAAAATATCCTTATATTGCATCCATGGGTGTCTATGTGTTTAGAACTGAAACCCTGCTGCAACTATTAAGATGGAATGGTTCTTCATGCAATGACTTTGGATCTGAAATTATCCCATCTGCTGTGAATGAGCACAATGTCCAGGCATATTTATTCAATGACTACTGGGAAGATATTGGAACTATAAAGTCCTTCTTTGATGCAAATCTTGCCCTAACAGAACAACCTCCTAAATTTGAATTCTATGATCCAAAGACTCCTTTCTTCACTTCCCCAAGATTCCTACCACCTACCAAAGTAGAAAAATGCAAGATTGTGGATGCAATTATATCTCATGGTTGCTTCTTGAGGGAGTGTAGCATTCAACATTCCATTGTAGGAGTACGCTCACGTTTGGAGTCTGGTGTAGAGCTTCAGGATACGATGATGATGGGTGCCGACTACTATCAAACTGAGTATGAAATTGCATCTCTGCTGGCAGAAGGGAAGGTTCCAATTGGTGTTGGGGAAAATACTAAAATTAGGAATTGCATAATCGACAAGAATGCCAAGATAGGAAGAAATGTGGTCATAGAAAACATCGATGGTGTTCAAGAAGCTGACAGGGCAAAGGAAGGATTCTACATTAGATCGGGCATCACAATTACATTAAAAAATGCAACAATTAAAGATGGAACAGTTATATGA 1593 0.4225 MDSTCAILSGRNLAKVCEGIGRNRRSGFWGESTRRSVNTRFLSVQSWKTSRTSRNLRNSKPGSGIAHAVLTSDINEDSMAFQGVPTFEKPEVDPKSVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFILTQFNSFSLNRHLSRAYSFGNGITFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVEHILILSGDHLYRMDYMNFVQRHVDTNADITVSCVPMDDSRASDYGLMKIDKTGRIIQFAEKPKGSDLKAMRVDTTLLGLSPQEAEKYPYIASMGVYVFRTETLLQLLRWNGSSCNDFGSEIIPSAVNEHNVQAYLFNDYWEDIGTIKSFFDANLALTEQPPKFEFYDPKTPFFTSPRFLPPTKVEKCKIVDAIISHGCFLRECSIQHSIVGVRSRLESGVELQDTMMMGADYYQTEYEIASLLAEGKVPIGVGENTKIRNCIIDKNAKIGRNVVIENIDGVQEADRAKEGFYIRSGITITLKNATIKDGTVI 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00286 530 Gene3D Hexapeptide repeat proteins 396 530 - -
Gma04g00286 530 CDD LbH_G1P_AT_C 398 524 - -
Gma04g00286 530 CDD ADP_Glucose_PP 100 361 - -
Gma04g00286 530 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 98 494 IPR011831 GO:0005978|GO:0008878
Gma04g00286 530 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 87 395 IPR029044 -
Gma04g00286 530 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 103 122 IPR005836 GO:0005978|GO:0008878
Gma04g00286 530 SUPERFAMILY Trimeric LpxA-like enzymes 392 530 IPR011004 -
Gma04g00286 530 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 1 530 IPR011831 GO:0005978|GO:0008878
Gma04g00286 530 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 194 202 IPR005836 GO:0005978|GO:0008878
Gma04g00286 530 Pfam Nucleotidyl transferase 99 376 IPR005835 GO:0009058|GO:0016779
Gma04g00286 530 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 309 319 IPR005836 GO:0005978|GO:0008878
Gma04g00286 530 SUPERFAMILY Nucleotide-diphospho-sugar transferases 97 492 IPR029044 -
Gma04g00286 530 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC 1 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00286 Gma-Chr4 2496611 2500994 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00286 04 2496611 2500994 Gma06g00272 06 2425373 2429462 GST
Gma17g02411 17 42103884 42108036 Gma04g00286 04 2496611 2500994 PCT
Gma14g00624 14 6091892 6096299 Gma04g00286 04 2496611 2500994 PCT
Gma04g00286 04 2496611 2500994 Gma17g02411 17 42103884 42108036 PCT
Gma04g00286 04 2496611 2500994 Gma14g00624 14 6091892 6096299 PCT