Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00261 ATGGCTAATCTCTCACTCTTGTTCTTCGGTCTCCTCCTATTCTCCGCTGCCGTAGCCACCGTCGAACGAATCGACGATGAAGACAACCTTCTGATCCGTCAAGTGGTGCCGGACGCGGAGGACCACCACCTGCTCAACGCGGAGCACCACTTCTCCGCCTTCAAGACAAAGTTCGCCAAGACCTACGCCACGCAGGAGGAGCACGACCACCGCTTCCGTATCTTCAAGAACAACTTGCTCCGCGCCAAGTCGCACCAGAAATTGGACCCCTCCGCCGTCCACGGCGTCACCAGGTTCTCCGATCTCACTCCGTCTGAGTTTCGCGGCCAGTTCCTCGGCCTGAAGCCGCTCCGCCTTCCCTCCGACGCTCAGAAGGCTCCGATCCTTCCGACCAGCGACCTTCCTACCGATTTCGATTGGCGCGACCATGGAGCTGTTACCGGCGTCAAGAATCAGGGCTCGTGCGGATCGTGTTGGTCATTTAGCGCCGTTGGAGCTTTGGAAGGTGCCCATTTTCTTTCTACCGGTGGGCTCGTGAGCCTCAGTGAGCAGCAACTTGTGGATTGCGATCATGAGTGTGATCCGGAAGAGCGTGGAGCATGTGATTCGGGTTGTAACGGTGGGTTGATGACCACTGCATTTGAGTACACACTCAAGGCTGGTGGACTAATGCGAGAAGAGGATTATCCCTACACTGGAAGAGACCGTGGCCCCTGCAAATTTGACAAGAGCAAAATCGCTGCTTCCGTGGCTAATTTCAGTGTGGTTTCCCTTGATGAAGAACAAATTGCTGCAAATCTGGTCAAGAATGGTCCTCTTGCAGTTGGTATCAATGCAGTTTTTATGCAGACATATATTGGTGGCGTCTCATGCCCATACATCTGCGGCAAGCATTTGGATCATGGGGTTCTTTTGGTGGGCTATGGATCTGGTGCTTATGCTCCAATTCGTTTTAAGGAAAAGCCTTACTGGATCATAAAGAATTCATGGGGGGAGAGCTGGGGAGAAGAAGGATATTACAAGATCTGCAGAGGTCGCAATGTATGTGGGGTGGACTCGATGGTCTCAACTGTAGCTGCTATACATGTTTCTAACCATTAA 1101 0.5259 MANLSLLFFGLLLFSAAVATVERIDDEDNLLIRQVVPDAEDHHLLNAEHHFSAFKTKFAKTYATQEEHDHRFRIFKNNLLRAKSHQKLDPSAVHGVTRFSDLTPSEFRGQFLGLKPLRLPSDAQKAPILPTSDLPTDFDWRDHGAVTGVKNQGSCGSCWSFSAVGALEGAHFLSTGGLVSLSEQQLVDCDHECDPEERGACDSGCNGGLMTTAFEYTLKAGGLMREEDYPYTGRDRGPCKFDKSKIAASVANFSVVSLDEEQIAANLVKNGPLAVGINAVFMQTYIGGVSCPYICGKHLDHGVLLVGYGSGAYAPIRFKEKPYWIIKNSWGESWGEEGYYKICRGRNVCGVDSMVSTVAAIHVSNH 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00261 366 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 323 342 IPR025661 -
Gma04g00261 366 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 152 163 IPR000169 -
Gma04g00261 366 Pfam Papain family cysteine protease 134 357 IPR000668 GO:0006508|GO:0008234
Gma04g00261 366 PANTHER CYSTEINE PROTEASE RD19C-RELATED 27 360 - -
Gma04g00261 366 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 27 360 - -
Gma04g00261 366 SMART pept_c1 134 359 IPR000668 GO:0006508|GO:0008234
Gma04g00261 366 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 299 309 IPR025660 -
Gma04g00261 366 Pfam Cathepsin propeptide inhibitor domain (I29) 51 107 IPR013201 -
Gma04g00261 366 PRINTS Papain cysteine protease (C1) family signature 152 167 IPR000668 GO:0006508|GO:0008234
Gma04g00261 366 PRINTS Papain cysteine protease (C1) family signature 301 311 IPR000668 GO:0006508|GO:0008234
Gma04g00261 366 PRINTS Papain cysteine protease (C1) family signature 323 329 IPR000668 GO:0006508|GO:0008234
Gma04g00261 366 SUPERFAMILY Cysteine proteinases 48 359 IPR038765 -
Gma04g00261 366 SMART Inhibitor_I29_2 51 107 IPR013201 -
Gma04g00261 366 CDD Peptidase_C1A 135 358 IPR039417 -
Gma04g00261 366 Gene3D Cysteine proteinases 21 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00261 Gma-Chr4 2282295 2283780 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00261 04 2282295 2283780 Gma04g00261 04 2282295 2283780 ECH
Gma04g00261 04 2282295 2283780 Gma06g00245 06 2191828 2193876 GST
Gma17g02435 17 42312281 42315523 Gma04g00261 04 2282295 2283780 PCT
Gma14g02107 14 52178236 52181120 Gma04g00261 04 2282295 2283780 PCT
Gma04g00261 04 2282295 2283780 Gma17g02435 17 42312281 42315523 PCT
Gma04g00261 04 2282295 2283780 Gma14g02107 14 52178236 52181120 PCT