Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00260 ATGGCTGGTTTCTTCTCTCTAGGTGGGACACAAAACAAGGAAGAAGAGGAAGTAGAAAAAGGAGACAAGAATAACCTATTGCTGTTGAGGAACGAGGAGATCTACAACAACAAGGGTGGGTTCGAGATATGGCCACAGTCGTCGTCGTCGTATCACTTGAGCAACTACTTTGCGTTTGGAGTGGGTCCTAGTCGCAGGAACAGGTCGGAGGATGTTTCATTGTGCGTGTCGGAGGATGAGTCTACGAGATTTGGATTAAGTGTGATGAGGACTGGAGGAAGCAGCAGCAGCAGCATGAGCATGAACTGTCAGGACTGTGGGAACCAAGCCAAGAAAGACTGCGCGCATCTTAGATGCAGGACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAGACCCACGTCAAGAGCACTTGGGTTCCCGCAGCCAAGCGCCGCGAACGACACCAGCAACTCGCTGAGTTGCAGCTACAACAACAATTCCGTGGAGTAGGAGACAATATTCCTAAACGACATCATCCAGATACTACTACTAGTACTCAACTTGCCTCCGCTCCACAACCCGTTACAGGGTTAGAGCTGGGACAATTCCCAGCTGAAGTGAGCACTTCGGCGTTGTTTCGGTGTGTGAGAGTGAGCGCAGTGGACGCTTCAGATGAACAGTATGCGTATCAAACCTCTGTCAACATCGGAGGACATGTTTTCAAGGGATTTCTCTACGATCAAGGTCCTGAAAGTTCTTACACTGGTGCAGCAGCTGAGGGTTCCTCCGGTGGTGAACCTCAACAACTTGGTTTTATAACCGCCGCCGCAACCACAGCCACAACAAGTGGGAACAGCCCATTTGACCCTTCACTTTACCCAGCTCCGTTGAATGCTTTCATGGCTGGAGCTTTCTGGCTGGTGCTGAACTCGAAGCCGCTTTTTCCCGTTTATCCGTTTGCTTGCCAGATCGAAATAGAACGAAAGTCGTTTTCTTCCCACGATGAATCTGCTACGGTCGGAGCTCATCGATCCATTTCTTACCTTGGCGATCTCGGCCCCATTCAATTCAAAGATATTAAAAGATGTGGGGAAATGGCACGTAGGCTACGGTTGTTTAAGGAACAAATGACGAAAGCAGGTGTATCTCCCTCAATGTGGTCAACAAGAGACGATCATTTTGATCTGGAACATTTGGAGGTTGTTAAACTTGAAGAACTTGAAGCTGAGCTCCTCGAGATTAATGCAAATAATGAGAAGTTGCAGCACACTTACAATGAGCTATTAGAGTATAAGCTTGTTCTAGAGAAGGTTGGTGAGCTTTTCTCTTCAGCAAAAAATAAGGCTGTAGCTCACCAGAAAGAGCTTGAATTTCAGACAACTGTTGAAGGGTCTATTGACAGTCCATTATTATTGGAACAAGAGGAGACGACAACAAAGCAAATTAAGCTGGGGTTTATTGGTGGACTTGTTCATAGGGAAAAATCAATTCCTTTCGAAAGAATTATATTTCGTGCTGCTAGGGGAAATCTGTTTCTCAAACAGGGTGTGATTGAACATCCTGTTCTTGATCCTTTGTCAGGAGAGAAGGTTCATAAAAACGTATTTGTTGTCTTTTATTCCGGAGAAAGAGTTAAAAGTAAAATTCTGAAAATATGTGATGCTTTTGGAGCAAATCGTTATGCTTTCTCAAATGACTCGAGTAAACAATTTCAGACGATAAGAGAGGTTTCTGGAAGAATTTCAGAATTGAAGGCTACCATTGATGCAGCGTTGATTCACCGGAGCACTCTATTGCAGACAATTGGATATCACCATGGGCAGTGGAGGCTTCTGATTCACAAAGTATTGCAGCGGGCAACTATGGACTGCAGTTCTCAAGTTGTGGCGATATTCCAGGTTTTAGAGACAACGGAATCACCACCTACCTATTTTTGCACAAACAAATTCACTTCTTTCCAAGAAATTGTTGATGCCTATGGAATCGCCAAGTACCAGGAAGCAAATCCCGGTGTATACACAGTTGTCACGTTTCCATTCCTTTTTGCCGTAATGTTTGGTGACTGGGGGCATGGCATATGCTTATTACTGGCGGCTTTGTATTTAATGATCAGAGAGAGAAAATTTGCTAGTCAGCAGAAACTTGGAGACATAATGGAAATGGCATTCGGCGGACGCTATATTATTATGATGATGGCCCTCTTCTCAATCTATACCGGGGATGCTTCTACAACAGGTTTCATAAAAGTGCGTAGCACTTATCCATTTGGCGTGGATCCTAAATGCCATGGTACTCGGAGTGAACTGCCATTTCTTAATTCTTTGAAGATGAAGATGTCAATTCTGCTGGGGGTATCCCAGATGAACCTTGGAATCATAATGAGTTACTTTAATGCAAAATACTTCAAAAACAACATAAATATCTGGTACCAGTTCGTTCCCCAGATAATATTCTTAAACAGCTTGTTTGGCTATCTTTCACTCCTCATAATTATAAAATGGAGCACTGGGTCGCAGGCTGACCTGTATCATCTGATGATATACACGTTCCTAAGCCCAACTGATGATTTGGGTGAAAACCAGCTTTTCGTTGGTCAAAAGCTCCTTCAACTCGTGTTACTACTGTTGGCAGTTGTTGCTGTGCCATGGATGCTACTACCAAAGCCCTTTCTCCTGAAGAAGCAACATCAAGAAAGGCATCAAGGCCAATCTTACGATTTGCTCTGCGGCACCGATGACACTCTTGAATCAGAATCACAAAGTATTGCCCATGACCATGACGAGTTTGACTTCAGCGAGGTTTTTGTGCACCAACTTATACATACAATAGAATTTGTGCTTGGAGCTGTTTCTAACACGGCATCGTCTCTACGTTTCCTAGCTCATTCGGAGTTGTCCAGTGTTTTCTATGACAAAGTTCTGCTTCTGGCCTGGGGGTATAATAACACTATTGTTCTTATTATTGGCATTTTTGTTTTTATCTGTGCAACTGTTGGTGTGTTACTGTTAATGGAAAGTCCAAGTGCTTTCTTACATGCTTTGAGACTTCACTGGGTAGAGTACCAGAACAAATTTTATGAGGGAGATGGTTACAATTTCTTCCCGTTTTCATTTACATTACTCACGGATGAGGATGAACTGTAA 3123 0.4384 MAGFFSLGGTQNKEEEEVEKGDKNNLLLLRNEEIYNNKGGFEIWPQSSSSYHLSNYFAFGVGPSRRNRSEDVSLCVSEDESTRFGLSVMRTGGSSSSSMSMNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERHQQLAELQLQQQFRGVGDNIPKRHHPDTTTSTQLASAPQPVTGLELGQFPAEVSTSALFRCVRVSAVDASDEQYAYQTSVNIGGHVFKGFLYDQGPESSYTGAAAEGSSGGEPQQLGFITAAATTATTSGNSPFDPSLYPAPLNAFMAGAFWLVLNSKPLFPVYPFACQIEIERKSFSSHDESATVGAHRSISYLGDLGPIQFKDIKRCGEMARRLRLFKEQMTKAGVSPSMWSTRDDHFDLEHLEVVKLEELEAELLEINANNEKLQHTYNELLEYKLVLEKVGELFSSAKNKAVAHQKELEFQTTVEGSIDSPLLLEQEETTTKQIKLGFIGGLVHREKSIPFERIIFRAARGNLFLKQGVIEHPVLDPLSGEKVHKNVFVVFYSGERVKSKILKICDAFGANRYAFSNDSSKQFQTIREVSGRISELKATIDAALIHRSTLLQTIGYHHGQWRLLIHKVLQRATMDCSSQVVAIFQVLETTESPPTYFCTNKFTSFQEIVDAYGIAKYQEANPGVYTVVTFPFLFAVMFGDWGHGICLLLAALYLMIRERKFASQQKLGDIMEMAFGGRYIIMMMALFSIYTGDASTTGFIKVRSTYPFGVDPKCHGTRSELPFLNSLKMKMSILLGVSQMNLGIIMSYFNAKYFKNNINIWYQFVPQIIFLNSLFGYLSLLIIIKWSTGSQADLYHLMIYTFLSPTDDLGENQLFVGQKLLQLVLLLLAVVAVPWMLLPKPFLLKKQHQERHQGQSYDLLCGTDDTLESESQSIAHDHDEFDFSEVFVHQLIHTIEFVLGAVSNTASSLRFLAHSELSSVFYDKVLLLAWGYNNTIVLIIGIFVFICATVGVLLLMESPSAFLHALRLHWVEYQNKFYEGDGYNFFPFSFTLLTDEDEL 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00260 1040 Pfam V-type ATPase 116kDa subunit family 606 733 IPR002490 GO:0033179|GO:0046961|GO:1902600
Gma04g00260 1040 Pfam V-type ATPase 116kDa subunit family 351 608 IPR002490 GO:0033179|GO:0046961|GO:1902600
Gma04g00260 1040 Pfam V-type ATPase 116kDa subunit family 742 1031 IPR002490 GO:0033179|GO:0046961|GO:1902600
Gma04g00260 1040 Coils Coil 397 417 - -
Gma04g00260 1040 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 334 608 - -
Gma04g00260 1040 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 606 1040 - -
Gma04g00260 1040 MobiDBLite consensus disorder prediction 1 21 - -
Gma04g00260 1040 MobiDBLite consensus disorder prediction 164 184 - -
Gma04g00260 1040 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 102 144 IPR006510 -
Gma04g00260 1040 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 195 243 IPR006511 -
Gma04g00260 1040 PANTHER VACUOLAR PROTON ATPASES 334 608 IPR002490 GO:0033179|GO:0046961|GO:1902600
Gma04g00260 1040 PANTHER VACUOLAR PROTON ATPASES 606 1040 IPR002490 GO:0033179|GO:0046961|GO:1902600
Gma04g00260 1040 Pfam Domain of unknown function (DUF702) 100 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00260 Gma-Chr4 2265079 2281599 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gma04g00260 V_ATPase_I 3e-159 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00260 04 2265079 2281599 Gma06g00081 06 737531 738502 ECH
Gma04g00260 04 2265079 2281599 Gma11g01036 11 8782079 8783164 ECH
Gma04g00260 04 2265079 2281599 Gma12g00349 12 2877924 2879038 ECH
Gma04g00260 04 2265079 2281599 Gma04g00260 04 2265079 2281599 ECH
Gma04g00260 04 2265079 2281599 Gma06g00081 06 737531 738502 GST
Gma17g02436 17 42323263 42326608 Gma04g00260 04 2265079 2281599 PCT
Gma14g02108 14 52194372 52196139 Gma04g00260 04 2265079 2281599 PCT
Gma04g00260 04 2265079 2281599 Gma17g02436 17 42323263 42326608 PCT
Gma04g00260 04 2265079 2281599 Gma14g02108 14 52194372 52196139 PCT