Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00185 ATGGCTTCGCTTTGTGCCCTAAACTATCCTCCTGCTCGCAGAGACGATTCAGTCGTCGAAGATTACCATGGTGTCAAAATTGCCGATCCTTATCGATGGCTCGAAGATCCTGATGCGGAAGAAGTGAAAGAGTTCGTAGCGAAACAGGTTCAGCTGACGGATTCGGTTCTTCAAAAATGCGAAACGAGAGGGAAGCTTAGGGAAACGATAACGAAGCTATTTGACCATCCTCGTTACGACGCTCCGTTTAGGCGAGCCAATAAGTACTTTTACTTCCATAACACTGGCCTTCAGCCGCAAAACATTCTATATGTGCAGGAGAGTTTGGAGGGAGAGGCAGAGGCTTTGCTCGATCCCAATACCTTCAGTGAAGACGGAACCGTTTCCCTGAGCACACTTTCGGTGAGCGAAGATGCCAAGTACTTGGCTTATGCGCTTAGTTCAAGTGGTAGCGATTGGACTACTATAAAAGTAATGCGGATTGAGGACCGGAATGTTGAGCCTGATACCTTATCGTGGGTCAAGTTTTCCTCAATTAGTTGGACGCACGATGGCAAAGGTTTCTTTTATAGCCGCTATCCAGCACCCAAAGATGGAGAAGTAGTAGATGCTGGTACTGAAACAAATGCTAACCTTCATCATCAGCTCTATTATCATTTTCTGGGTACAGATCAATCGGAAGATATTTTGTGCTGGAGAGATCCTGAAAATCCTAAATATACGTTTGGAGGAAGTGTAACTGATGATGGCAAGTACATCCTTCTCCATATTGCAGAAGGGTGTGATCCAGTTAACAAACTTTACTACTGCGACTTGTCCAAACTTCCTAATGCGCTGGAAGGCTTTCGGAATGGAAATTCTCTCCTCCCATTTGCCAAACTTATTGATAACTTTGATGCACAGTATGAAGCCATTGCCAATGATGACACCGTGTTTACATTTTTAACTAATAAAGATGCTCCAAAATATAAAATAGTCCGAGTAGATTTGAAAGAACCAACTGCTTGGGCTGATGTTCTCCAAGAGTCTGAAAAAGATGTACTGGAGTCAGCATGTGCTGTAAATGGCAACCAACTGATAGTAAGTTACTTGAGTGATGTGAAGTATCTTCTACAAGTAAGAGACTTAAAAACAGGATCCTTGCTGCATCAATTACCAATTGAGATTGGCAGTGTTTCTGAAATTTCTGCACGACGTGAAGATAGTGTGGTTTTCATTGGCTTTACAAGCTTCTTAACTCCCGGTATCATCTACCAGTGCAACCTAGGAACAGAGATTCCTGATATGAAGATATTTCGTGAAATTGTTGTCCCTGGGTTTGATCGGTCTGAATTTCATGTTAAACAGGATTTCGTGACTAGTAAAGATGGTACCAAGATCCCAATGTTCATTGTTGCCAAAAAGGATATTACTTTGGATGGTTCACACCCATGTTTGTTATATGGATATGGTGGTTTTAACATCAATATTACGCCATATTTCAGTGTCAGTCGCATTGTACTCACAAGACATTTAGGTGTTGTTTTCAGCATAGCAAATATTCGTGGTGGTGGAGAATATGGGGAGGAATGGCATAAAGCAGGCTCCCTTGCAAGAAAGCAGAATTGCTTTGATGACTTCATTTCTGCTGCTGAATACCTTGTATCTACTGGTTACACTCAACCCAAAAAGTTATGCATCGAAGGTGGAAGCAATGGTGGACTTCTTGTTGGTGCTTGTATAAATCAGAGACCTGATTTATTTGGCTGTGCTCTGGCTCATGTTGGTGTTATGGACATGCTACGGTTCCACAAATTTACCATAGGTCATGCTTGGACCTCTGATTATGGTTGTTCAGACAAGGAGGAAGAGTTTCATTGGCTAATCAAATACTCACCATTACATAATGTCCGGAGACCGTGGGAACAGCATCATGATCAGTCATTTCAGTATCCATCAACCATGCTGTTGACAGCTGATCATGATGATCGTGTTGTGCCACTGCACACATTGAAGCTATTAGCGACCATGCAATATGTCCTCTGTACGAGCTTGGAAAAAAGTCCCCAGACAAACGCTATAATTGGTCGCATTGACTGCAAGTCTGGTCATGGAGCTGGTCGTCCAACACAGAAAATGATCGATGAAGCTGCTGACCGGTACGGTTTTATGGCTAAAGTGTTGGAAGTGCATTGGATTGAATAG 2184 0.4267 MASLCALNYPPARRDDSVVEDYHGVKIADPYRWLEDPDAEEVKEFVAKQVQLTDSVLQKCETRGKLRETITKLFDHPRYDAPFRRANKYFYFHNTGLQPQNILYVQESLEGEAEALLDPNTFSEDGTVSLSTLSVSEDAKYLAYALSSSGSDWTTIKVMRIEDRNVEPDTLSWVKFSSISWTHDGKGFFYSRYPAPKDGEVVDAGTETNANLHHQLYYHFLGTDQSEDILCWRDPENPKYTFGGSVTDDGKYILLHIAEGCDPVNKLYYCDLSKLPNALEGFRNGNSLLPFAKLIDNFDAQYEAIANDDTVFTFLTNKDAPKYKIVRVDLKEPTAWADVLQESEKDVLESACAVNGNQLIVSYLSDVKYLLQVRDLKTGSLLHQLPIEIGSVSEISARREDSVVFIGFTSFLTPGIIYQCNLGTEIPDMKIFREIVVPGFDRSEFHVKQDFVTSKDGTKIPMFIVAKKDITLDGSHPCLLYGYGGFNINITPYFSVSRIVLTRHLGVVFSIANIRGGGEYGEEWHKAGSLARKQNCFDDFISAAEYLVSTGYTQPKKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRFHKFTIGHAWTSDYGCSDKEEEFHWLIKYSPLHNVRRPWEQHHDQSFQYPSTMLLTADHDDRVVPLHTLKLLATMQYVLCTSLEKSPQTNAIIGRIDCKSGHGAGRPTQKMIDEAADRYGFMAKVLEVHWIE 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00185 727 Pfam Prolyl oligopeptidase family 492 722 IPR001375 GO:0006508|GO:0008236
Gma04g00185 727 Gene3D alpha/beta hydrolase 18 717 IPR029058 -
Gma04g00185 727 PANTHER PROLYL OLIGOPEPTIDASE-LIKE PROTEIN 6 727 - -
Gma04g00185 727 SUPERFAMILY Peptidase/esterase 'gauge' domain 6 425 - -
Gma04g00185 727 SUPERFAMILY alpha/beta-Hydrolases 447 671 IPR029058 -
Gma04g00185 727 Gene3D - 77 436 - -
Gma04g00185 727 ProSitePatterns Prolyl endopeptidase family serine active site. 539 569 IPR002471 GO:0004252|GO:0006508
Gma04g00185 727 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 477 495 IPR002470 GO:0004252|GO:0006508
Gma04g00185 727 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 504 528 IPR002470 GO:0004252|GO:0006508
Gma04g00185 727 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 532 551 IPR002470 GO:0004252|GO:0006508
Gma04g00185 727 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 562 582 IPR002470 GO:0004252|GO:0006508
Gma04g00185 727 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 644 666 IPR002470 GO:0004252|GO:0006508
Gma04g00185 727 Pfam Prolyl oligopeptidase, N-terminal beta-propeller domain 10 425 IPR023302 GO:0004252
Gma04g00185 727 PANTHER PROLYL ENDOPEPTIDASE 6 727 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00185 Gma-Chr4 1570245 1576311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00185 484 609 Carbohydrate Esterase AT5G36210 33.594 2.87e-06 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00185 04 1570245 1576311 Gma04g00185 04 1570245 1576311 ECH
Gma14g02177 14 52892842 52898075 Gma04g00185 04 1570245 1576311 PCT
Gma04g00185 04 1570245 1576311 Gma14g02177 14 52892842 52898075 PCT