Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02380 ATGCATGGCTACTACCGCTCACTGGGCAAACATGGTGTTCGATTTTTTTCTCTTGTCTTTTCTTTGATGCACAAATTCCGAGCTGTTCATTCTGAGCTGGTGAGATCCATGGAAGATATAGGTCCGAATTCATGCACAAGGCCAGTGACAGAGAAGAAAGCAAGACCCCAAGAACAATTGAATTGTCCAAGGTGCAGTTCAACCAACACAAAGTTCTGTTATTACAACAACTACAGCCTCACACAGCCAAGATACTTCTGCAAGACTTGTAGAAGGTATTGGACAGAAGGAGGGTCTCTGAGAAACGTTCCCGTTGGAGGTGGCTCTAGGAAAAACAAGAGGGTCACCTCATCAAAGGTTCCTGACTTGAATCCACCAATTAGCCTCTCATCAGTCTCAGCCATTTCTTCCCAAAACCCTAAAATGCAAGGAGTCCATGACCTTAATCTGGCTTTTTCTGCAGCTATGGACAAGTATCATCATGGCACGTCTCCGTATGTTGAGATGCCAACACTTGAAATTGGTGGTGATCACAGTACTAGTCATCATAGTCACCACCATAGCCATAGCCCTTCTTCTGCAGTTGAGCTACTACGGTCTGGCATGGATTCTAGGGGTTTGAATCCTTATGCTCCTAATTCCTTGATGTCAGGCTCAGATCATTCCCTTTATACACCTGGCTATCCCATGCAGGAAATTAAACCAAACCTTAGCTTTTCAGTTGATGATGGATTTGGAAATAGATCATATGGGGTTCAAGAGAATGGTGGAGGGAGGCTTTTGTTCCCTTTTGGAGACATCAAGCACCTTTCTGCAGGTCTTGAAGTGGAACACAATAAAGAACAAGGAAATAATTCAACTGGATATTGGACTGGTTGGTGA 882 0.4399 MHGYYRSLGKHGVRFFSLVFSLMHKFRAVHSELVRSMEDIGPNSCTRPVTEKKARPQEQLNCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRVTSSKVPDLNPPISLSSVSAISSQNPKMQGVHDLNLAFSAAMDKYHHGTSPYVEMPTLEIGGDHSTSHHSHHHSHSPSSAVELLRSGMDSRGLNPYAPNSLMSGSDHSLYTPGYPMQEIKPNLSFSVDDGFGNRSYGVQENGGGRLLFPFGDIKHLSAGLEVEHNKEQGNNSTGYWTGW 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02380 293 PANTHER DOF ZINC FINGER PROTEIN DOF3.7 43 292 - -
Gma03g02380 293 ProSiteProfiles Zinc finger Dof-type profile. 60 114 IPR003851 GO:0003677|GO:0006355
Gma03g02380 293 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 43 292 IPR045174 GO:0003700|GO:0006355
Gma03g02380 293 Pfam Dof domain, zinc finger 58 114 IPR003851 GO:0003677|GO:0006355
Gma03g02380 293 ProSitePatterns Zinc finger Dof-type signature. 62 98 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02380 Gma-Chr3 48931401 48933319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02380 52 292 C2C2-Dof Transcription Factor Family AT3G61850 48.302 4.35e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma03g02380 zf-Dof 6.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02380 - - gmx:100775598 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02380 03 48931401 48933319 Gma03g02380 03 48931401 48933319 ECH
Gma07g00506 07 4765181 4767879 Gma03g02380 03 48931401 48933319 ECH
Gma19g02426 19 52751676 52753714 Gma03g02380 03 48931401 48933319 GST
Gma03g02380 03 48931401 48933319 Gma07g00506 07 4765181 4767879 PCT
Gma03g02380 03 48931401 48933319 Gma16g00202 16 2151344 2153631 PCT
Gma07g00506 07 4765181 4767879 Gma03g02380 03 48931401 48933319 PCT
Gma16g00202 16 2151344 2153631 Gma03g02380 03 48931401 48933319 PCT