Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02377 ATGGCTTCTTCTTCAGATGTTAACCATCTTTCACATCCTTGCATCTATGGGGATTATAGTTCTTCTCGCTCAGAGAGAAAGTCCGGTTTCATGAAATGGCTTAGTAAGCTTTTCAGAGGTGGGTCCAATAGAGGAAGGGGCTGTCGTCACCTGCATGAGCCAGCAGAGGAAAGCATAGTTCGGGGTGCTCCATCTAGAGCTTTGGATGATCGTGGTAGAGCTCAGAAGGAGAAAGAGGATTTAGGCCATGCAATGGCACTTTCTTCAGCCGAAGATTTAAAGAGACCAAACGGATATAATTGGGGAGAAGACACCGGTGATGATTACTCAAAGGCACCTCACGATACCCTTAACTCATCTGCACACCCTCCATTTGCCCCTACACCATTTTATCCCCATCCCCACAAATATAGAAGAGTATGTGGTGGCTGCAACCAAGAGATAATGTATGGAAATTGTTTGGGCTGCATGGATACTTATTTTCACCCAAATTGTTTTCGCTGTCACTCTTGTGGTTACCCCATTACCGAGCGCGAGTTTTCCTTGTCAGGGAAGCATCCATATCACAAGTCCTGTTTTAAAGAGCTGACTCATCCTAAATGTGAAGTTTGCTTCCAATTTattcctataaatgctgctggtttgattgagtataggtgccaccccttttggtcgcaaaagtattgtccatctcatgagtatgataataCAGCTCGCTGCTGTAGTTGTGAAAGATTGGAGCCTCTGAACATAAAATACTATAGACTAGAAGATGGACGGAGTTTGTGTTTAGAGTGCATGGAATCTGCTATAATGGATACCGGTGATTGCCAACCCCTATACCATTCTATCAGAGACTACTATGAAGGAATGCAGATGAGAATAGATCAACAAGTTCCCATGCTTCTAGTTGAGAGGGAAGCACTGAATGAAGCTATTGTAGGGGAGAAAAATGGTTTTCATCACTTACCGGAAACAAGAGGTTTATGCCTTTCAGAAGAGCAGACTGTCACCAGTATACATAGAAGACCAAGAATTGGAGGCCATCGACTAATAGGGATGAGAACTCAACCTCAAAAACTGACTAGAAAATGTGAAGTCACAGCAATTCTTGTTCTATATGGTCTTCCTAGGTTACTCACAGGTGCAATACTTGCCCATGAGTTGATGCATGCATGGCTACGCCTTCATGGTTATCGCAACCTTACTCCCGAAGTAGAGGAAGGCATTTGTCAGGTTCTTTCGTATATGTGGCTTGAGTCAGAAGTAATGCCTAGCTTTCAAAACATGCCATCAACAtccacaagtgctggttcttcctactcttcttcctcctcctcctcctcctcgtcgtcctcctcctcctcaaagaagGGTGCAAAATCTCATGTTGAAAATAAATTGGGTGAATTTTTCAAGAATCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCTGCTAATGAAGCTGTCAATAAATATGGTTTGCGTAGAACACTTGACCATATTCATTGGACTGGTTTTTTCCCAGTGGAAAAAGAACGCAAGTTCTCTAAGTATGGATAG 1578 0.3847 MASSSDVNHLSHPCIYGDYSSSRSERKSGFMKWLSKLFRGGSNRGRGCRHLHEPAEESIVRGAPSRALDDRGRAQKEKEDLGHAMALSSAEDLKRPNGYNWGEDTGDDYSKAPHDTLNSSAHPPFAPTPFYPHPHKYRRVCGGCNQEIMYGNCLGCMDTYFHPNCFRCHSCGYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPLNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQVPMLLVEREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLHGYRNLTPEVEEGICQVLSYMWLESEVMPSFQNMPSTSTSAGSSYSSSSSSSSSSSSSSSKKGAKSHVENKLGEFFKNQIANDSSPAYGGGFRAANEAVNKYGLRRTLDHIHWTGFFPVEKERKFSKYG 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02377 525 PANTHER PROTEIN DA1-RELATED 2 20 515 IPR045218 -
Gma02g02377 525 CDD LIM_DA1 141 193 - -
Gma02g02377 525 Pfam LIM domain 141 194 IPR001781 -
Gma02g02377 525 SMART lim_4 140 192 IPR001781 -
Gma02g02377 525 MobiDBLite consensus disorder prediction 430 459 - -
Gma02g02377 525 Pfam Protein DA1 290 509 IPR022087 -
Gma02g02377 525 ProSiteProfiles LIM domain profile. 139 199 IPR001781 -
Gma02g02377 525 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 515 - -
Gma02g02377 525 ProSitePatterns LIM zinc-binding domain signature. 141 175 IPR001781 -
Gma02g02377 525 Gene3D Cysteine Rich Protein 136 200 - -
Gma02g02377 525 MobiDBLite consensus disorder prediction 430 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02377 Gma-Chr2 49838914 49843576 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma02g02377 DA1-like 6e-102 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02377 02 49838914 49843576 Gma02g02377 02 49838914 49843576 ECH
Gma14g02114 14 52258396 52269960 Gma02g02377 02 49838914 49843576 GST
Gma18g00321 18 2653739 2658613 Gma02g02377 02 49838914 49843576 PCT
Gma11g02261 11 37927950 37933164 Gma02g02377 02 49838914 49843576 PCT
Gma02g02377 02 49838914 49843576 Gma18g00321 18 2653739 2658613 PCT
Gma02g02377 02 49838914 49843576 Gma11g02261 11 37927950 37933164 PCT