Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02294 ATGAAACCAAACTTTGATCTTGAAGTGGAGGCATGTGCAGCATATGAATCTGAAGTTAGCAGCCAGGTTGCTTCCAATGTATCTATTCAAGAAACCTCTATAGGTCCTTGTAGTGACAGTCTCACTAACATTTCCAACATCACAAATCCAATAGGGATTCATCCTAATTCAGATGCTATTTCACTTGACTTAAGTCTCAACTTCAAGAATAGTGCGCCAGGGGGAAGAGATTCAATAGGATTCTCCTTCTCAAGCACTAGCGAGAGCAGCAATGAACCTGCCTCACAAACTACAGCAGCAACCATTCCACGAGTCTTCTCTTGCAATTACTGCCAGCGCAAGTTTTTCAGTTCTCAGGCTCTTGGTGGACACCAGAATGCACACAAGAGAGAAAGGACATTAGCAAAAAGGGCTATGAGAATGGGATTTTTCTCTGAAAGGTACGCCAATCTAGCATCTCTCCCTCTGCATGGTTCTTTCAGGTCCTTAGGAATAAAGGCGCACTCTTCACTGCACCATGGTTTCTCACCAACAATGAGGCGTCCTGAGATAAAGAACAATGCAAGATTTGATCAAGGGTATGTTGGCCACCCGATATTCTTGGAGGATGATGAGTCAGATTTGTTGTGGCCTGGTAGTTTTCGTCAAGTTGCTGAGGCAGGTGATAGTCATCAGAATTTCATACTGACTGGAAGTTCAAATTTGAGTTTTACTGAGGTGAATCCACCTGTAGACATAGATAACTCAACACCAGATTTGACTTTGAAACTTTGA 774 0.4289 MKPNFDLEVEACAAYESEVSSQVASNVSIQETSIGPCSDSLTNISNITNPIGIHPNSDAISLDLSLNFKNSAPGGRDSIGFSFSSTSESSNEPASQTTAATIPRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGFFSERYANLASLPLHGSFRSLGIKAHSSLHHGFSPTMRRPEIKNNARFDQGYVGHPIFLEDDESDLLWPGSFRQVAEAGDSHQNFILTGSSNLSFTEVNPPVDIDNSTPDLTLKL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02294 257 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 257 - -
Gma02g02294 257 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Gma02g02294 257 PANTHER ZINC FINGER PROTEIN JAGGED 1 257 IPR045320 GO:0003700
Gma02g02294 257 MobiDBLite consensus disorder prediction 79 98 - -
Gma02g02294 257 SUPERFAMILY beta-beta-alpha zinc fingers 104 133 IPR036236 -
Gma02g02294 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Gma02g02294 257 Gene3D Classic Zinc Finger 84 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02294 Gma-Chr2 49006459 49008655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02294 88 257 C2H2 Transcription Factor Family AT1G66140 52.041 2.27e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma02g02294 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g02067 14 51792704 51793477 Gma02g02294 02 49006459 49008655 GST
Gma18g00399 18 3615625 3618839 Gma02g02294 02 49006459 49008655 PCT
Gma11g02171 11 36797590 36798339 Gma02g02294 02 49006459 49008655 PCT
Gma02g02294 02 49006459 49008655 Gma18g00399 18 3615625 3618839 PCT
Gma02g02294 02 49006459 49008655 Gma11g02171 11 36797590 36798339 PCT