Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01848 ATGGAAAGTGGGTGGAAGCCTGAGGTTGAGATGTCACCAAATTGCCCTAGGTGTGGTTCTTCCAACACCAAGTTCTGCTACTACAACAACTACAGCTTAACTCAACCAAGGTACTTTTGCAAGGGGTGCAGAAGGTACTGGACCAAAGGAGGGTCTCTCCGCAATGTGCCTGTCGGAGGTGGCTGCAAGAAGAACAGAAGAGGTAACAAGACCTTGTTGAGACAATCCATTGATGGTTTCACTTTCAAAAACTCGTCGCCACCTTGTGGCTATGCCACAGATCACAATAATAACCCTTTAGGGCATTCTTATGATCCTAGAATAAGGGCTTCTTCAGCTTCTAGCTCCTCCTCAGTAGTGACTGATGGACCTAACATTGATCTTGCTCTAGTTTTTGCAAATTTCCTTAACCAAAAGCCCAATAGTTCTGAAGGTGGGGTTGAGAGTAGTACTAATCCAGATCAAGAGCAAACAGTTTTTGATCCTTCTCTAGAAAACAATTCAAGGCTATCAAACACAGATGTTGTTGGTCCAAGTACTTTGCCTGAAGAACTTGGTCTCACTGGGTGTTTGAATCTTCCTGAACAACAACCACACACACATTCTAGTGAGGCTAATAATAACAATAACCAAATGTGCTATGGTGAGTTCAACACTATGCAGACACTTCAAAAAGATGGAATTGAGCAATACAGTAGTCATGGTGGTGCTATGAATTTTGAGCTGCCACCATTGCCGGGTGAAGGGGAAGCCTCACATGATCATCACATGATGTGGTCGAATTCTGAGATGATGATAAATCATCATGCATTTCAAGTCACACAACCTCCACTACTTGGACTTGAAGTTCATGATGCAGACTTATTAATAGGTAATTGGAGCCCCTTTGATTCGCCAAAGGATACTTCTTTTTCCAGGCCTTGA 924 0.4307 MESGWKPEVEMSPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCKKNRRGNKTLLRQSIDGFTFKNSSPPCGYATDHNNNPLGHSYDPRIRASSASSSSSVVTDGPNIDLALVFANFLNQKPNSSEGGVESSTNPDQEQTVFDPSLENNSRLSNTDVVGPSTLPEELGLTGCLNLPEQQPHTHSSEANNNNNQMCYGEFNTMQTLQKDGIEQYSSHGGAMNFELPPLPGEGEASHDHHMMWSNSEMMINHHAFQVTQPPLLGLEVHDADLLIGNWSPFDSPKDTSFSRP 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01848 307 MobiDBLite consensus disorder prediction 141 181 - -
Gma02g01848 307 ProSiteProfiles Zinc finger Dof-type profile. 13 67 IPR003851 GO:0003677|GO:0006355
Gma02g01848 307 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 1 303 - -
Gma02g01848 307 ProSitePatterns Zinc finger Dof-type signature. 15 51 IPR003851 GO:0003677|GO:0006355
Gma02g01848 307 Pfam Dof domain, zinc finger 13 67 IPR003851 GO:0003677|GO:0006355
Gma02g01848 307 MobiDBLite consensus disorder prediction 141 178 - -
Gma02g01848 307 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 303 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01848 Gma-Chr2 42677716 42678639 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01848 5 301 C2C2-Dof Transcription Factor Family AT3G52440 37.299 2.26e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma02g01848 zf-Dof 1.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01848 - - gmx:100794208 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01848 02 42677716 42678639 Gma02g01848 02 42677716 42678639 ECH
Gma10g00761 10 10052780 10054221 Gma02g01848 02 42677716 42678639 GST
Gma19g01906 19 48244727 48245533 Gma02g01848 02 42677716 42678639 PCT
Gma02g01848 02 42677716 42678639 Gma19g01906 19 48244727 48245533 PCT