Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01178 ATGTCGGCAGTGTCGCCGTCGCCGTCGACTTCCACGGCTGCGCCACCGCCACAAACATCACCTTCTGCCAACACCACTAGTCCTCCACCGTCCACCGTCACCACTCCACCGCCGCAACAAACCCCTTCTTCCACTTCCTCGCCGCAACAACCAGCTTCTCCGCCACCAACAACCCCTTCTCCTGCGAATCCGCCGCCTTCACCGCCGTCACCACCACCTAGTTCTCCGCCTCCCTCCATGTCTGGAACCCCACCTCCATTAGTACCTCCACCATCCCCACCACCATCACCACCATCTTCACCGCCGCCATCTTCTCCGGCAGCGCCGCCACCGGTGCCACCTAGCTCTCCACCGCCACCATCACCATCAGCACCTGTTCCACCAAACCCTCCTAACAACACATCTCCaccaccatcacaaccaccacagtcaccagctccaccaccacaaccaccagctccaccaccacaaccaccagctccaccaccacaaccaccagctccaccaccTAACAACACTTCACCATCACCACCACGAAATTCGCCACCCTCTCCGGCCGCCACGCCACCACGGGCCTCCCCACCGCAAAATTCACCATCCCCTCCGGCTGTGCCGCCTCCTAGAAACTCCACTAGGTCACCGCCGTCGGCTAATTCACCGCCACCGCCGGTGAATGCACCGCCTCCGAGGTCATCGGCTCCACCAGCACCCGAACCATCCACTCCTCCTTCTAGGACTAGTACTCCTCCCACACCAAGTTCTCAACCAGCTCCAACTTCAAATTCTACACCAAGGTCATCACCTCCATCACCACCTTCAACTACTAATTTGGCCCCGCCACCGCCATCGCGAGTTTTATCATCACCACTACCATCACCGGCTCAGAATGGGACAAAAAACCCAAGCCCTGATGGAGGTGGAGATGGAATTGGCACCGGTGGTGTAGTGGCTATTAGTGTGGTGGCTGGATTTCTTCTTCTTGGCTTCATTGGTGTTCTTATATGGTGCATGAGAAGGCAAAAGAGAAAGCTGCCTGTGAGTGGTGGTTATGTCATGCCATCCACTCTTGCCTCATCTCCTGAATCAGATTCATCCTTTTTTAAGACACACTCCTCAGCTCCTCTTGTACAAAGTGGCTCTGGCAGTGATGTTGTGTACACACCATCTGACCCTGGTGGACTAGGCAACTCAAGGTCATGGTTTTCATATGAAGAACTAATCAAGGTCACAAATGGTTTCTCAACTCAAAATCTTTTGGGCGAGGGTGGATTTGGTTGTGTGTATAAagggtgccttcctgatgggagagacatagcagtcaaacagctgaagattggtggaggtcagggagagagagagttcaaggccgaagtggaaattattggtcgcatacatcatcgccatttggtttctctggtgggatactgcattgaagacagcagaagactacttgtctatgactatgtccctaacaataacctttattttcatctacatgGGGAAGGCCAGCCTGTGCTAGAATGGGCAAACCGTGTTAAAATTGCAGCTGGTGCAGCCCGAGGACTAGCTTATCTCCATGAAGACTGCAACCCTAGGATCATTCACAGGGATATCAAGTCATCAAACATTCTCTTAGATTTCAATTTTGAAGCCAAGGTCTCAGATTTTGGGCTGGCCAAATTAGCTCTTGATGCAAATACGCATATAACCACCCGTGTCATGGGAACTTTTGGGTATATGGCCCCTGAATATGCGTCAAGTGGCAAATTGACTGAGAAGTCCGATGTATATTCTTTTGGAGTTGTGCTTTTGGAACTAATTACTGGACGGAAGCCAGTAGATGCATCTCAACCTTTGGGAGATGAGAGCTTAGTTGAATGGGCTCGACCTTTACTGAGTCATGCACTCGACACTGAGGAATTCGATAGTTTGGCAGATCCAAGGCTAGAAAAGAATTATGTTGAGAGTGAATTGTATTGCATGATTGAAGTTGCTGCTGCTTGTGTGCGGCATTCAGCTGCAAAGAGACCTCGCATGGGACAGGTTGTTAGAGCTTTCGATAGCTTAGGAGGTTCTGATCTAACTAATGGAATGAGACTTGGGGAAAGCCAGGTGTTTGACTCTGCACAGCAATCTGAAGAAATAAGATTATTTCGGAGGATGGCATTTGGTAGTCAAAATTATAGCACAGATTTCTTTAGCCGTGCTAGTTTGAATCCATGA 2223 0.4368 MSAVSPSPSTSTAAPPPQTSPSANTTSPPPSTVTTPPPQQTPSSTSSPQQPASPPPTTPSPANPPPSPPSPPPSSPPPSMSGTPPPLVPPPSPPPSPPSSPPPSSPAAPPPVPPSSPPPPSPSAPVPPNPPNNTSPPPSQPPQSPAPPPQPPAPPPQPPAPPPQPPAPPPNNTSPSPPRNSPPSPAATPPRASPPQNSPSPPAVPPPRNSTRSPPSANSPPPPVNAPPPRSSAPPAPEPSTPPSRTSTPPTPSSQPAPTSNSTPRSSPPSPPSTTNLAPPPPSRVLSSPLPSPAQNGTKNPSPDGGGDGIGTGGVVAISVVAGFLLLGFIGVLIWCMRRQKRKLPVSGGYVMPSTLASSPESDSSFFKTHSSAPLVQSGSGSDVVYTPSDPGGLGNSRSWFSYEELIKVTNGFSTQNLLGEGGFGCVYKGCLPDGRDIAVKQLKIGGGQGEREFKAEVEIIGRIHHRHLVSLVGYCIEDSRRLLVYDYVPNNNLYFHLHGEGQPVLEWANRVKIAAGAARGLAYLHEDCNPRIIHRDIKSSNILLDFNFEAKVSDFGLAKLALDANTHITTRVMGTFGYMAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDASQPLGDESLVEWARPLLSHALDTEEFDSLADPRLEKNYVESELYCMIEVAAACVRHSAAKRPRMGQVVRAFDSLGGSDLTNGMRLGESQVFDSAQQSEEIRLFRRMAFGSQNYSTDFFSRASLNP 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01178 740 Gene3D Transferase(Phosphotransferase) domain 1 489 698 - -
Gma02g01178 740 MobiDBLite consensus disorder prediction 1 308 - -
Gma02g01178 740 Pfam Protein tyrosine and serine/threonine kinase 415 684 IPR001245 GO:0004672|GO:0006468
Gma02g01178 740 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672|GO:0006468
Gma02g01178 740 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 118 735 - -
Gma02g01178 740 Gene3D Phosphorylase Kinase; domain 1 393 488 - -
Gma02g01178 740 SUPERFAMILY Protein kinase-like (PK-like) 395 684 IPR011009 -
Gma02g01178 740 PRINTS Pistil-specific extensin-like signature 109 132 IPR003882 -
Gma02g01178 740 PRINTS Pistil-specific extensin-like signature 142 160 IPR003882 -
Gma02g01178 740 CDD STKc_IRAK 419 689 - -
Gma02g01178 740 PANTHER BNACNNG34790D PROTEIN 118 735 - -
Gma02g01178 740 MobiDBLite consensus disorder prediction 30 288 - -
Gma02g01178 740 ProSitePatterns Protein kinases ATP-binding region signature. 419 441 IPR017441 GO:0005524
Gma02g01178 740 ProSiteProfiles Protein kinase domain profile. 413 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma02g01178 740 SMART serkin_6 413 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01178 Gma-Chr2 13249894 13255145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01178 164 736 Trihelix Transcription Factor Family AT5G38560 57.340 0.0 599
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Gma02g01178 PK_Tyr_Ser-Thr 3.5e-44 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01178 02 13249894 13255145 Gma02g01178 02 13249894 13255145 ECH