Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00914 ATGAAAAAGGAATTAGAAGATCAAGGCCAGTGTTCCTCTCCACCAATCATCAACAACAACATTCAAAGCTACCAAGAACACCTTCTTCTTCAACAACAGATGCAACAAAACAGTGACATCTTTGGTGGTGGTGGTGGTTCAAAAGGGCTAATGTTCCCACCTGAAGTAGTCTCTTCAATCTTACAACAACAACCATGGTCCATTCCTCCAGTTCCCTCCTTCAATCCCAACCCGGTTCACTACAACAACACAAACCCGGTTCATCATCATGAGCAAGCATCATCATTTCTTGTCCCTCCTCCCACAACAACACCTTCACCCTATGCAAGCTTCTTCAGCAGCAGAAGGGTTGTCCCTTCTCTTCATTTTGCATACGAGGGTCCCTCTTCTCATCATGATCACCACCATTTGAGGATCATATCTGACACCCTTGGACCCATGGTTCAACCCGGTTCAGCAGCACCCTTTGGACTCCAAGCCGAGCTGGGAAGGATGACTGCTCAAGAAATCATGGAGGCTAAGGCTCTTGCTGCTTCCAAGAGTCACAGTGAAGCTGAAAGAAGACGCAGAGAGAGAATCAACAACCATCTTGCCAAGCTTCGCAGTTTGCTTCCTAACACTACCAAAACAGATAAAGCTTCATTATTAGCAGAAGTGATTCAGCAAGTGAAGGAGCTGAAGCGCCAAACCTCACTCATAGTAGAAATGAGTACAGTGCCCACCGAATCAGACGAGTTAACGGTGGACGCAATCGACGAAGACGGAAAGTTCGTGATCAAAGCCTCACTGTGCTGCGAAGATAGGTCAGATCTCTTACCTGACCTAATCAAGACGCTAAAAGCATTGAGACTAAGAACCCTTAGGGCCGAAATCACTTCACTCGGTGGACGTGTGAAGAACGTGTTAGTCATAACCGGTGATGAAGAAGAAAATTCGAACACCAACAATGGAGAACAAAGCATGCAACAACAATATTGTATTAGCTCAATACAAGAAGCACTTAAGGCAGTGATGGAGAAGAGTGGTGGTGGGGATGAATCAGCTTCTGGGAATGTTAAGCGCCAAAGGACTACTACTACTAATAATAAAATCAATATCCTTGAACAAAGCTCTTTATGA 1119 0.4504 MKKELEDQGQCSSPPIINNNIQSYQEHLLLQQQMQQNSDIFGGGGGSKGLMFPPEVVSSILQQQPWSIPPVPSFNPNPVHYNNTNPVHHHEQASSFLVPPPTTTPSPYASFFSSRRVVPSLHFAYEGPSSHHDHHHLRIISDTLGPMVQPGSAAPFGLQAELGRMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQQVKELKRQTSLIVEMSTVPTESDELTVDAIDEDGKFVIKASLCCEDRSDLLPDLIKTLKALRLRTLRAEITSLGGRVKNVLVITGDEEENSNTNNGEQSMQQQYCISSIQEALKAVMEKSGGGDESASGNVKRQRTTTTNNKINILEQSSL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00914 372 SMART finulus 183 232 IPR011598 GO:0046983
Gma02g00914 372 Gene3D - 172 232 IPR036638 GO:0046983
Gma02g00914 372 PANTHER TRANSCRIPTION FACTOR BHLH30 85 361 - -
Gma02g00914 372 MobiDBLite consensus disorder prediction 348 372 - -
Gma02g00914 372 MobiDBLite consensus disorder prediction 338 372 - -
Gma02g00914 372 Pfam Helix-loop-helix DNA-binding domain 180 226 IPR011598 GO:0046983
Gma02g00914 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 234 IPR036638 GO:0046983
Gma02g00914 372 CDD bHLH_AtAIG1_like 172 251 - -
Gma02g00914 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 226 IPR011598 GO:0046983
Gma02g00914 372 PANTHER TRANSCRIPTION FACTOR BHLH30 85 361 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00914 Gma-Chr2 9658704 9662364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00914 19 369 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 54.839 8.11e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma02g00914 HLH 5.9e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00914 02 9658704 9662364 Gma02g00914 02 9658704 9662364 ECH
Gma01g00864 01 27828528 27831816 Gma02g00914 02 9658704 9662364 GST