Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00906 ATGGATGCAATTAGTTGCATGGATGAGAGCACCACCACTGAGTCACTCTCTATAAGTCTTTCTCCGACGTCATCGTCGGAGAAAGCGAAGCCTTCTTCGATGATTACATCGTCGGAGAAGGTTTCTCTGTCCCCGCCGCCGTCAAACAGACTATGCCGTGTTGGAAGCGGCGCGAGCGCAGTCGTGGATCCTGATGGCGGCGGCAGCGGCGCTGAGGTAGAGTCGCGGAAACTCCCCTCGTCGAAGTACAAGGGCGTGGTGCCCCAGCCCAACGGCCGCTGGGGTGCGCAGATTTACGAGAAGCACCAGCGCGTGTGGCTTGGAACGTTCAACGAGGAAGACGAGGCGGCGCGTGCGTACGACATCGCCGCGCAGCGGTTCCGCGGCAAGGACGCCGTCACGAACTTCAAGCCGCTCGCCGGCGCCGACGACGACGACGGAGAATCGGAGTTTCTCAACTCGCATTCCAAACCCGAGATCGTCGACATGCTGCGAAAGCACACGTACAATGACGAGCTGGAGCAGAGCAAGCGCAGCCGCGGCGTCGTCCGGCGGCGAGGCTCCGCCGCCGCCGGCACCGCAAACTCAATTTCCGGCGCGTGCTTTACTAAGGCACGTGAGCAGCTATTCGAGAAGGCTGTTACGCCGAGCGACGTTGGGAAATTGAACCGTTTGGTGATACCGAAGCAGCACGCGGAGAAGCACTTTCCGTTACAGAGCTCTAACGGCGTTAGCGCGACGACGATAGCGGCGGTGACGGCGACGCCGACGGCGGCGAAGGGCGTTTTGTTGAACTTCGAAGACGTTGGAGGGAAAGTGTGGCGGTTTCGTTACTCGTATTGGAACAGTAGCCAGAGTTACGTCTTAACCAAAGGTTGGAGCCGGTTCGTTAAGGAGAAGAATCTGAAAGCTGGTGACACGGTTTGTTTTCACCGGTCCACTGGACCGGACAAGCAGCTTTACATCGATTGGAAGACGAGGAATGTTGTTAACAACGAGGTCGCGTTGTTCGGACCGGTCGGACCGGTTGTCGAACCGATCCAGATGGTTCGGCTCTTTGGGGTTAACATTTTGAAACTACCCGGTTCAGATACTATTGTTGGCAATAACAATAATGCAAGTGGGTGCTGCAATGGCAAGAGAAGAGAAATGGAACTGTTCTCGTTAGAGTGTAGCAAGAAACCTAAGATTATTGGTGCTTTGTAA 1206 0.5605 MDAISCMDESTTTESLSISLSPTSSSEKAKPSSMITSSEKVSLSPPPSNRLCRVGSGASAVVDPDGGGSGAEVESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPLAGADDDDGESEFLNSHSKPEIVDMLRKHTYNDELEQSKRSRGVVRRRGSAAAGTANSISGACFTKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSSNGVSATTIAAVTATPTAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDKQLYIDWKTRNVVNNEVALFGPVGPVVEPIQMVRLFGVNILKLPGSDTIVGNNNNASGCCNGKRREMELFSLECSKKPKIIGAL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00906 401 Gene3D AP2/ERF domain 81 138 IPR036955 GO:0003700|GO:0006355
Gma02g00906 401 CDD AP2 81 136 IPR001471 GO:0003700|GO:0006355
Gma02g00906 401 SUPERFAMILY DNA-binding domain 81 137 IPR016177 GO:0003677
Gma02g00906 401 Pfam B3 DNA binding domain 210 325 IPR003340 GO:0003677
Gma02g00906 401 CDD B3_DNA 209 313 IPR003340 GO:0003677
Gma02g00906 401 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 34 401 - -
Gma02g00906 401 Pfam AP2 domain 81 129 IPR001471 GO:0003700|GO:0006355
Gma02g00906 401 ProSiteProfiles AP2/ERF domain profile. 82 137 IPR001471 GO:0003700|GO:0006355
Gma02g00906 401 Gene3D - 199 335 IPR015300 -
Gma02g00906 401 MobiDBLite consensus disorder prediction 1 45 - -
Gma02g00906 401 SUPERFAMILY DNA-binding pseudobarrel domain 208 324 IPR015300 -
Gma02g00906 401 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 34 401 IPR044800 GO:0003700
Gma02g00906 401 SMART rav1_2 82 143 IPR001471 GO:0003700|GO:0006355
Gma02g00906 401 SMART B3_2 210 328 IPR003340 GO:0003677
Gma02g00906 401 MobiDBLite consensus disorder prediction 1 86 - -
Gma02g00906 401 ProSiteProfiles B3 DNA-binding domain profile. 210 328 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00906 Gma-Chr2 9491308 9493168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00906 5 401 B3 DNA Binding Superfamily AT1G25560 59.753 7.10e-147 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Gma02g00906 B3 2.3e-27 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00906 02 9491308 9493168 Gma02g00906 02 9491308 9493168 ECH