Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00898 ATGCAAGCTCACCACCCTTTCTCCTACATATCATCTTGTCCTGGTAATAGTACTAGTAGTGCCTTCTTGGAACCTCATCATCATCATCATGAAGCTGTAGTGGATGAAGCTTCCATCTCCCTCTCTCTTGGCCCTCCTGGccaacaacaccaacaacacaacaaccccaacaaAGCCGTGACTTCTTCCATTCCTCACCACCATTACCAGCAAAACCCTACTACTACTACTAGCTCTGATGATCATCATCGTCAGAGAGGTGGTGTAACTGTGGCCCTTCACATTGGCCTTCCCAGTACTACCCCAACAACTTCACCAAACAGTGTCACCACAACTACTACTACTACTAGCAAGTCGCCTGATCTTCATTTGGCCTCTGCTGCACCCAACATTCAGGGCCAGTACTGGATCCCTTCTCCTGCTCAAATCCTCATTGGACCCACCCAGTTCTCTTGCACTGTATGCAACAAAATGTTCAACCGTTTCAACAACATGCAGATGCACATGTGGGGACACGGTTCGCAATACAGAAAAGGCCCTGAATCACTTCGGGGCGCAAAGCCAGCATCGTCGATGCTGCGGCTTCCCTGCTACTGCTGTGCGGAGGGCTGCAAAAACAATATAGAACACCCGAGATCACGGCCGTTGAAGGACTTCAGGACCCTCCAGACGCACTACAAGAGGAAGCACGGGGCGAAGCCGTTCGGGTGCCGGAAGTGCGGGAAGCCTTTTGCGGTGAGAGGTGACTGGAGGACGCACGAGAAGAACTGCGGGAAGCTATGGTTCTGTATCTGTGGGTCTGATTTCAAGCACAAGAGGTCGCTTAAGGACCATGTTCGTGCCTTTGGGGATGGACATGCTCCTCACACTGTGGAGAGCTGTGGTCGGGTGGGGGAGGATGGCTTGTTGTTGTTGGGGGATGATGATGATGATGAGTTGGAAGTGGAGGAGGATGATGAGGAGGAGGATTATAATAGTAATGATTTGGTTTTTGGTTTTAATTAA 1005 0.4896 MQAHHPFSYISSCPGNSTSSAFLEPHHHHHEAVVDEASISLSLGPPGQQHQQHNNPNKAVTSSIPHHHYQQNPTTTTSSDDHHRQRGGVTVALHIGLPSTTPTTSPNSVTTTTTTTSKSPDLHLASAAPNIQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCGRVGEDGLLLLGDDDDDELEVEEDDEEEDYNSNDLVFGFN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00898 334 MobiDBLite consensus disorder prediction 312 326 - -
Gma02g00898 334 SUPERFAMILY beta-beta-alpha zinc fingers 218 255 IPR036236 -
Gma02g00898 334 Gene3D Classic Zinc Finger 177 260 - -
Gma02g00898 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 150 177 IPR013087 -
Gma02g00898 334 MobiDBLite consensus disorder prediction 312 334 - -
Gma02g00898 334 MobiDBLite consensus disorder prediction 41 121 - -
Gma02g00898 334 MobiDBLite consensus disorder prediction 96 121 - -
Gma02g00898 334 PANTHER ZINC FINGER PROTEIN WIP2 1 323 IPR043584 GO:0003700|GO:0010468
Gma02g00898 334 SUPERFAMILY beta-beta-alpha zinc fingers 146 171 IPR036236 -
Gma02g00898 334 PANTHER ZINC FINGER PROTEIN WIP6 1 323 - -
Gma02g00898 334 MobiDBLite consensus disorder prediction 42 78 - -
Gma02g00898 334 ProSitePatterns Zinc finger C2H2 type domain signature. 152 172 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00898 Gma-Chr2 9362878 9364708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00898 35 291 C2H2 Transcription Factor Family AT1G13290 68.605 2.50e-121 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma02g00898 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00898 02 9362878 9364708 Gma02g00898 02 9362878 9364708 ECH
Gma01g00848 01 27150316 27152607 Gma02g00898 02 9362878 9364708 GST