Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00888 ATGGCACCTCTCACTTATCTCTTCTTCCCACTTTTCCTCCTCTTTGCCTTAACACACTCCCGAAGCACACCACACTCCTCCAAAACGACACTCCTCGACGTCGTTTCCTCCCTCCAAAACGCACACAATGCCGTTGCCTTCACCCCCCATCACCTTAACCAACACCAACGACAACAAGAAGCCTTGCTTCTATCGTCGTCGTTTGGTATTCACTTACGTTCCCGAGCCTCAATTCAGAAACCCTCCCACAGAGACTACAAATCGCTAACCTTATCTCGACTCGCTCGCGACTCAGCCCGAGTCAAATCTTTACAAACTCGCCTGGATCTCGTTCTGAAACGCGTCTCGAACTCGGATCTCCACCCGGCCGAGTCAAACGCCGAGTTCGAAGCCAACGCGCTACAAGGTCCTGTTGTGTCGGGAACGAGTCAGGGAAGCGGCGAGTACTTCCTCCGAGTCGGAATCGGAAAGCCACCGAGTCAGGCCTACGTGGTGCTCGACACGGGAAGCGACGTGAGCTGGATCCAATGCGCGCCGTGCTCCGAATGCTACCAACAATCGGATCCAATTTTCGACCCAGTTTCGTCGAATTCGTACTCTCCGATCCGCTGCGACGCGCCGCAGTGTAAGTCCCTGGACCTCTCCGAGTGCCGCAACGGCACGTGCCTCTACGAAGTCTCCTATGGCGACGGATCATACACCGTCGGAGAGTTCGCCACGGAGACGGTGACGCTCGGCACGGCGGCGGTGGAGAACGTAGCCATCGGATGCGGCCACAACAACGAAGGACTGTTCGTCGGCGCCGCCGGTTTGCTCGGCCTCGGCGGCGGAAAGCTCTCTTTTCCAGCACAGGTCAACGCGACGTCGTTTTCTTACTGCCTCGTGAACCGCGACTCCGACGCCGTTTCAACTCTGGAGTTCAACTCTCCGTTGCCTCGAAACGTCGTTACTGCGCCGTTAAGGCGGAATCCCGAGCTCGACACGTTTTATTATCTCGGATTGAAAGGAATCAGCGTTGGCGGAGAAGCTCTTCCGATTCCGGAATCGATTTTTGAGGTTGACGCCATCGGCGGCGGAGGGATTATTATCGATTCCGGCACGGCGGTGACGCGGCTTAGGAGTGAGGTTTACGACGCGCTCCGCGACGCGTTTGTGAAGGGGGCGAAGGGGATTCCGAAGGCGAACGGCGTGTCGTTGTTTGATACATGCTACGACTTGTCATCGAGGGAGAGTGTGCAGGTTCCGACGGTGTCGTTTCATTTTCCCGAAGGGAGGGAGTTACCGTTACCAGCGAGGAATTACCTGATACCGGTTGACTCGGTGGGGACGTTCTGCTTCGCGTTTGCGCCCACGACGTCGTCGCTTTCAATCATGGGGAACGTGCAGCAGCAGGGGACACGTGTCGGTTTCGATATCGCGAACTCGCTCGTTGGATTCTCTGCTGATAGCTGCTAA 1455 0.5656 MAPLTYLFFPLFLLFALTHSRSTPHSSKTTLLDVVSSLQNAHNAVAFTPHHLNQHQRQQEALLLSSSFGIHLRSRASIQKPSHRDYKSLTLSRLARDSARVKSLQTRLDLVLKRVSNSDLHPAESNAEFEANALQGPVVSGTSQGSGEYFLRVGIGKPPSQAYVVLDTGSDVSWIQCAPCSECYQQSDPIFDPVSSNSYSPIRCDAPQCKSLDLSECRNGTCLYEVSYGDGSYTVGEFATETVTLGTAAVENVAIGCGHNNEGLFVGAAGLLGLGGGKLSFPAQVNATSFSYCLVNRDSDAVSTLEFNSPLPRNVVTAPLRRNPELDTFYYLGLKGISVGGEALPIPESIFEVDAIGGGGIIIDSGTAVTRLRSEVYDALRDAFVKGAKGIPKANGVSLFDTCYDLSSRESVQVPTVSFHFPEGRELPLPARNYLIPVDSVGTFCFAFAPTTSSLSIMGNVQQQGTRVGFDIANSLVGFSADSC 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00888 484 Pfam Xylanase inhibitor C-terminal 330 480 IPR032799 -
Gma02g00888 484 Gene3D Acid Proteases 308 484 IPR021109 -
Gma02g00888 484 ProSiteProfiles Peptidase family A1 domain profile. 149 480 IPR033121 -
Gma02g00888 484 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 164 175 IPR001969 GO:0004190|GO:0006508
Gma02g00888 484 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 8 484 - -
Gma02g00888 484 SUPERFAMILY Acid proteases 142 484 IPR021109 -
Gma02g00888 484 Gene3D Acid Proteases 122 307 IPR021109 -
Gma02g00888 484 Pfam Xylanase inhibitor N-terminal 149 306 IPR032861 -
Gma02g00888 484 PANTHER ASPARTYL PROTEASES 8 484 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00888 Gma-Chr2 9041189 9042662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00888 139 484 Miscellaneous Gene Families AT1G77480 25.393 3.50e-22 97.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00888 02 9041189 9042662 Gma02g00888 02 9041189 9042662 ECH
Gma01g00827 01 26001097 26002917 Gma02g00888 02 9041189 9042662 GST