Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01720 ATGCGAACGCTTTGTGATGCTTGTGAGAGCGCCGCGGCTATAGTTTTCTGCGCCGCTGATGAGGCTGCACTTTGTCGTGCCTGTGATGAGAAGGTTCACATGTGCAACAAGCTAGCTAGTAGGCATGTGAGGGTTGGTCTTGCTAGTCCAAGTGATGTACCACGGTGTGACATATGTGAGAATGCACCTGCTTTCTTCTATTGCGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATTGTTCATGTTGGAGGTAAAAGAACGCATGGAAGATATCTTCTGTTCAGGCAAAGAGTTGAGTTTCCAGGAGATAAATCTAGTCATGCTGAAAATCCGGCTTCACAACCATTGGAACCAGGTGAGGCTAAAAGAGGACAAAATCCACTTCCCAAACTAAAAATGGGAGAGAAGCAACAAAATCACAAGATGCCTATGGTTCCAACGCCAGGACCTGATGCTGATGGGCATGCCAAGATGGAAAGTAAAATGATTGATTTGAACATGAAGCCTAATAGAATACATGAACAAGCATCAAATAATCAGCCATAA 555 0.4432 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKSSHAENPASQPLEPGEAKRGQNPLPKLKMGEKQQNHKMPMVPTPGPDADGHAKMESKMIDLNMKPNRIHEQASNNQP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01720 184 CDD Bbox1_BBX-like 4 47 - -
Gma01g01720 184 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Gma01g01720 184 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Gma01g01720 184 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Gma01g01720 184 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 183 - -
Gma01g01720 184 SMART bboxneu5 1 47 IPR000315 GO:0008270
Gma01g01720 184 SMART bboxneu5 51 96 IPR000315 GO:0008270
Gma01g01720 184 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Gma01g01720 184 Gene3D Classic Zinc Finger 2 91 - -
Gma01g01720 184 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 183 - -
Gma01g01720 184 CDD Bbox1_BBX-like 56 96 - -
Gma01g01720 184 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gma01g01720 184 MobiDBLite consensus disorder prediction 105 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01720 Gma-Chr1 52898828 52901897 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Gma01g01720 zf-B_box 1.9e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00680 11 5679949 5683681 Gma01g01720 01 52898828 52901897 ECH
Gma01g01720 01 52898828 52901897 Gma01g01720 01 52898828 52901897 ECH
Gma04g00085 04 751498 753238 Gma01g01720 01 52898828 52901897 ECH
Gma06g00080 06 721842 723021 Gma01g01720 01 52898828 52901897 ECH
Gma11g01032 11 8750791 8752292 Gma01g01720 01 52898828 52901897 ECH