Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00870 ATGTCTTCACACCCATCATTCTTTTTCCTCTTCTTCTTCCTGCTTCTCACCCTCCCACATTATTCCTCCGAGTACCTCAAATTACCCTTACTTCCTCCCACCCCCCTCCCCTCTCCCTCCCAGCTCCTTGCCGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCACTCCACCTCCTTCTCCCCCCACCACTGCTACGACTCGCCGTGTCAACTCGTCCCCCACCCCCCGAGTCACAAAAATCGTCTCTGCCACAACCGCACCAAACTCCACACCCCATGCCGCTACCAATACTCCTACGCCGACGGGTCCACCTCCACCGGCTTCTTCTCCAAAGAAACAATAACACTCAACACTACTAGCTCTACCCTACTAACAACACTCAAAAAGCTTTCCTTCGGATGTGGGTTTAGAACCTCCGGCCCGAGCGTCACGGGCCACAGCTTTAACGGCGCGCAGGGCGTAATGGGCCTGGGCCGCGGCCCGATCTCCTTCACCTCCCAGCTCAGTAACACAAACACAAAACACACCTTCTCTTACTGTCTCCTCGACTACACCCTCTCCCCTCCCCCCACTAGCTACCTCACCATCGGCCCCACCCCAAATGACGCCGTTTCGCAGAACTCATTCACTTACACACCGTTACTCACTAACCCTTTTTCTCCTTCCTTTTACTACATTTCTATTCAGAGTGTTTCCGTTGACGGCGTTAGGTTACCGATAAGTGAATCTGTTTTTCGGATTGACGCCCACGGTAACGGCGGCACCGTCGTGGATTCTGGCACCACGCTCAGTTTTCTCGCGGAGCCGGCTTACGGAAAGATCCTCGCGGCGTTCCGGCTGCGCGTCAGGCTTCCGGCGGTGGAGAGCGCAGCCACGCTCGGGTTCGACCTTTGTGTGAATGTCTCCGGCGTGGCGAGGCCGAGGCTGCCGCGTCTGAGATTCCGGCTCGCCGGAAAAGCGGTTCTGTCTCCGCCGGCGGGAAATTATTTTATTGAACCGGCGGAGGGAGTGAAGTGTCTCGCGGTTCAACCGGTTCGACCGGGTTCTGGGTTTTCGGTGATTGGGAATCTGATGCAGCAGGGGTACTTGTTTGAGTTTGATTTGGACCGGTCTCGGATCGGGTTCACGCGTCACGGATGCGCGGTTCGCTAA 1503 0.4271 MSSHPSFFFLFFFLLLTLPHYSSEYLKLPLLPPTPLPSPSQLLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHSTSFSPHHCYDSPCQLVPHPPSHKNRLCHNRTKLHTPCRYQYSYADGSTSTGFFSKETITLNTTSSTLLTTLKKLSFGCGFRTSGPSVTGHSFNGAQGVMGLGRGPISFTSQLSNTNTKHTFSYCLLDYTLSPPPTSYLTIGPTPNDAVSQNSFTYTPLLTNPFSPSFYYISIQSVSVDGVRLPISESVFRIDAHGNGGTVVDSGTTLSFLAEPAYGKILAAFRLRVRLPAVESAATLGFDLCVNVSGVARPRLPRLRFRLAGKAVLSPPAGNYFIEPAEGVKCLAVQPVRPGSGFSVIGNLMQQGYLFEFDLDRSRIGFTRHGCAVR 500
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00870 500 Gene3D Acid Proteases 161 314 IPR021109 -
Gma01g00870 500 Coils Coil 171 171 - -
Gma01g00870 500 Pfam Xylanase inhibitor N-terminal 170 314 IPR032861 -
Gma01g00870 500 CDD pepsin_A_like_plant 210 497 IPR034161 -
Gma01g00870 500 Coils Coil 43 45 - -
Gma01g00870 500 SUPERFAMILY Acid proteases 171 497 IPR021109 -
Gma01g00870 500 Pfam Xylanase inhibitor C-terminal 341 493 IPR032799 -
Gma01g00870 500 Gene3D Acid Proteases 315 499 IPR021109 -
Gma01g00870 500 PANTHER OS07G0603500 PROTEIN-RELATED 170 499 - -
Gma01g00870 500 PANTHER BNAA02G27600D PROTEIN 170 499 - -
Gma01g00870 500 ProSiteProfiles Peptidase family A1 domain profile. 1 493 IPR033121 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gma01g00870 Gma-Chr1 27989834 27991336 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00870 210 497 Miscellaneous Gene Families AT1G77480 25.329 1.28e-14 73.9
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00870 01 27989834 27991336 Gma01g00870 01 27989834 27991336 ECH
Gma01g00870 01 27989834 27991336 Gma02g00915 02 9682771 9683709 GST