Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00864 ATGAAAAAGGAATTAGAAGATCAAGGTCAGTGTTCCTCTTTACCAATCGATACCAAAAACAACATTCAAAGCTACCAAGAACACCTCCTTCAACAACAGATGCAACAAAACAGTGACATCTTTGGGGGTGGTGCTTCAAGAGGGCTAATGTTCCCACCTGAAGTCTCTCCAACCTTGCAACAACAATCATGGTCCATGCCTCCGGTTCACTCCTTCAACTCCAACCCGGTTCACTACATCAACAACAACAACACAAACCCGGTTCATCATCATCATGAGCAAGCACCATTTCTTGTCCCTCCTCCCACAACACCTTCACCCTATGCAAGCTTCTTCAGCAGCAGAAGGGTTGTCCCTTCTCTTCAGTTTGCATACGAGGGTCCCTCTTCTCATCTTGATCACCACCACCATCTGAGGATCATTTCTGACACCCTTGGACCCATGGTTCAACCCGGTTCAGCAGCACCCTTTGGACTCCAAGCCGAGCTGGGAAAGATGACTGCTCAAGAAATCATGGAGGCTAAGGCTCTTGCTGCTTCAAAGAGTCACAGTGAAGCTGAAAGAAGACGTAGAGAGAGAATCAACAACCATCTTGCCAAGCTTCGCAGTTTGCTTCCTAACACCACCAAAACAGACAAAGCTTCGTTATTGGCAGAAGTGATTCAACACGTGAAGGAGCTGAAGCGCCAAACCTCACTCATAGCAGAAACGAGTCCAGTGCCAACCGAATCAGACGAGTTAACCGTTGATGCAGTCGACGAAGACGGAAAGTTCGTGATCAAAGCCTCTCTGTGCTGCGAAGATAGGTCAGATCTCTTGCCTGACCTAATCAAAACACTAAAAGCGTTGAGACTCAGAACCCTCAAAGCCGAAATCACGTCCCTTGGTGGACGTGTGAAGAACGTGTTAGTCATAACCGGTGATGAAGATAATTCAAATTCAAACACCCATAATGGAGAACAAAGCATGCAACAACAACAACAACAATTCTGTATTAGCTCAATTCAAGAAGCACTCAAGGCAGTGATGGAGAAGAGTGGTGGTGGGGATGAATCAGCTTCTGGGAATGTTAAGCGCCAAAGGACTACTACTAATAATAATATCAATATCCTTGAACAAAGGTCTTTATGa 1131 0.4571 MKKELEDQGQCSSLPIDTKNNIQSYQEHLLQQQMQQNSDIFGGGASRGLMFPPEVSPTLQQQSWSMPPVHSFNSNPVHYINNNNTNPVHHHHEQAPFLVPPPTTPSPYASFFSSRRVVPSLQFAYEGPSSHLDHHHHLRIISDTLGPMVQPGSAAPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTESDELTVDAVDEDGKFVIKASLCCEDRSDLLPDLIKTLKALRLRTLKAEITSLGGRVKNVLVITGDEDNSNSNTHNGEQSMQQQQQQFCISSIQEALKAVMEKSGGGDESASGNVKRQRTTTNNNINILEQRSL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00864 376 MobiDBLite consensus disorder prediction 343 376 - -
Gma01g00864 376 Pfam Helix-loop-helix DNA-binding domain 181 227 IPR011598 GO:0046983
Gma01g00864 376 CDD bHLH_AtAIG1_like 173 252 - -
Gma01g00864 376 PANTHER TRANSCRIPTION FACTOR BHLH30 86 368 - -
Gma01g00864 376 SMART finulus 184 233 IPR011598 GO:0046983
Gma01g00864 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 227 IPR011598 GO:0046983
Gma01g00864 376 PANTHER TRANSCRIPTION FACTOR BHLH30 86 368 IPR045847 GO:0003700|GO:0006355
Gma01g00864 376 Gene3D - 173 234 IPR036638 GO:0046983
Gma01g00864 376 CDD ACT_UUR-ACR-like 263 314 - -
Gma01g00864 376 MobiDBLite consensus disorder prediction 353 376 - -
Gma01g00864 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 234 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00864 Gma-Chr1 27828528 27831816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00864 20 374 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 55.556 1.89e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma01g00864 HLH 2.6e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00864 01 27828528 27831816 Gma01g00864 01 27828528 27831816 ECH
Gma01g00864 01 27828528 27831816 Gma02g00914 02 9658704 9662364 GST