Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00861 ATGGCAACTATAGGAATTGGAGTAGGAGTGACGAAGCTCCAACCCCACAAACCAAAGTCTAAGTCCTTGTTTCTTGGCCAGAGGCTTAGGATTAGACCATTTTGGGGGGAGCCTCAATGCAGTGAAAGAAGATTATTCAGTGTCTCAAACCCCCCAAGAGTGGTTCAAGTTTTTGCACTAGCGGGTGGTGAATGGCTTGACACTGTTCACAGCCTCTTTGTGGGTGTTGGGGTTGGACTTCCTTGCAGTGTGATGCAGTGTGGTGATGTGATATATAGGAGCACTCTTCCCAAGTCAAATGGCTTGACACTCACTGTCCCTGGGGTGATTTTGGCTTTGGGGACCCTATCTTACCTTTGGGCCACACCTGGTGTGGCACCTGGTTTCTTTGACATGTTTGTTCTTGCTTTTGTTGAGAGGCTGTTCAGacccacttacaagaagGATGATTTTGTTCTGGGGAAGAAGTTGGGGGAGGGATCATTTGGAGTTGTTTATAGAGTGTCTCTGGCCAACAAACCCTCTTCAAAGGAAGGTGACTTAGTCTTGAAGAAGGCAACTGAATATGGTGCTGTAGAAATTTGGATGAATGAGCGTGTACGAAGAGCTTGTGCAAGCAGCTGTGCAGATTTTGTTTATGGTTTTCTTGAGAGCTCTTCAAAGAAAGCTGCGGAATACTGGCTTATATGGCGGTTTGAAGGGGATGCCACCCTAGCTGACTTGATGCAGAGTAGAGACTTTCCATATAATGTTGAAACATTAATTTTGGGTGAGGTCCAAGACTTGCCCAAAGGATTGGAGAGAGAAAATAGAATCATACAAACAATTGTGAGGCAGATCTTGTTTGCACTGGATGGTCTTCACTCAACTGGTATTGTACATAGGGATATTAAGCCACAGAACATTATTTTCTCAGAAGAGTCTCGTACATTCAAAATCATTGATCTTGGAGCTGCTACAGACCTGCGAGTCGGAATCAACTACATTCCTAAAGAGTTTCTTTTGGATCCAAGATATGCTGCACCAGAACAATACATCATGAGCACACAAACTCCATCGGCACCCTCAGTTCCAGTTGCAACTGCACTTTCGCCAGTCTTATGGCAGTTGAACTTGCCAGACAGATTTGATATCTATAGTGCTGGTTTAATCTTCCTTCAAATGGCATTCCCCAGTTTACGTTCTGATAATAGCCTCATACAATTCAACCGTCAACTAAAGAGGTGTGACTATGACTTGGTCGCATGGAGAAAATCTGCTGAGCCTCGATCTGAACTTAGAAAGGGCTTTGAGTTGTTGGATTTGGATGGTGGAATAGGATGGGAACTTCTGAAATCCATGGTAAGGTACAAAGCAAGACAAAGGTTGAGTGCAAAAGCAGCATTAGCTCATCCTTACTTTGTCAGAGAAGGCTTGTTGGCATTGTCTTTCATGCAAACACTGAGACTGCAGCTCTTTCGCGCAACTCAGCAGGACTATTCAGAAGCTGCCAGGTGGATTATTCAGCTAATGGCAAAATCCGGGACACAGAAGGATGGTGGATTCACCGAAGCTCAGCTTCAGGAACTGAGAGAAATTGAACCTAAAAAGAAGGCTAGTGCACCGAGAAATGCTCTAGCTTCAGCCCTTAGACTTCAGAGGAAAATTATAAGAACCTTAAATGAGAGTATGGATGAGCTCACAAGACGCCGGAAAAGCTTTTGGTGGAGCAGATGGATCCCAAGAGAGGAATGA 1734 0.4418 MATIGIGVGVTKLQPHKPKSKSLFLGQRLRIRPFWGEPQCSERRLFSVSNPPRVVQVFALAGGEWLDTVHSLFVGVGVGLPCSVMQCGDVIYRSTLPKSNGLTLTVPGVILALGTLSYLWATPGVAPGFFDMFVLAFVERLFRPTYKKDDFVLGKKLGEGSFGVVYRVSLANKPSSKEGDLVLKKATEYGAVEIWMNERVRRACASSCADFVYGFLESSSKKAAEYWLIWRFEGDATLADLMQSRDFPYNVETLILGEVQDLPKGLERENRIIQTIVRQILFALDGLHSTGIVHRDIKPQNIIFSEESRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSVPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPSLRSDNSLIQFNRQLKRCDYDLVAWRKSAEPRSELRKGFELLDLDGGIGWELLKSMVRYKARQRLSAKAALAHPYFVREGLLALSFMQTLRLQLFRATQQDYSEAARWIIQLMAKSGTQKDGGFTEAQLQELREIEPKKKASAPRNALASALRLQRKIIRTLNESMDELTRRRKSFWWSRWIPREE 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00861 577 Coils Coil 543 563 - -
Gma01g00861 577 CDD STKc_SNT7_plant 155 467 - -
Gma01g00861 577 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 17 577 IPR044803 GO:0004674|GO:0009579
Gma01g00861 577 PANTHER SERINE/THREONINE-PROTEIN KINASE STN7, CHLOROPLASTIC 17 577 - -
Gma01g00861 577 SUPERFAMILY Protein kinase-like (PK-like) 146 472 IPR011009 -
Gma01g00861 577 Gene3D Phosphorylase Kinase; domain 1 137 231 - -
Gma01g00861 577 Gene3D Transferase(Phosphotransferase) domain 1 260 471 - -
Gma01g00861 577 ProSitePatterns Protein kinases ATP-binding region signature. 157 184 IPR017441 GO:0005524
Gma01g00861 577 ProSiteProfiles Protein kinase domain profile. 151 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g00861 577 SMART serkin_6 151 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g00861 577 Pfam Protein kinase domain 153 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g00861 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 292 304 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00861 Gma-Chr1 27678588 27684487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00861 269 467 Core Cell Cycle Gene Families AT2G38620 28.436 9.09e-14 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Gma01g00861 Pkinase 8.4e-19 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00861 01 27678588 27684487 Gma01g00861 01 27678588 27684487 ECH
Gma01g00861 01 27678588 27684487 Gma02g00909 02 9600107 9605544 GST