Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00857 ATGGATGCAATTAGTTGCCTGGATGAGAGCACCACCACCGAGTCACTCTCCATAAGTCAGGCGAAGCCTTCTTCGACGATTATGTCGTCCGAGAAGGCTTCTCCTTCCCCGCCGCCGCCGAACAGGCTGTGCCGCGTCGGTAGCGGTGCTAGCGCAGTCGTGGATTCCGACGGCGGCGGCGGGGGTGGCAGCACCGAGGTGGAGTCGCGGAAGCTCCCCTCGTCCAAGTATAAGGGCGTCGTGCCCCAGCCCAACGGCCGCTGGGGCTCGCAGATTTACGAGAAGCACCAGCGCGTGTGGCTGGGAACGTTCAACGAGGAAGACGAGGCGGCGCGTGCGTACGACGTCGCCGTGCAGCGATTCCGCGGCAAGGACGCCGTCACAAACTTCAAGCCGCTCTCCGGCACCGACGACGACGACGGGGAATCGGAGTTTCTCAACTCGCATTCGAAATCCGAGATCGTCGACATGCTGCGTAAGCATACGTACAATGACGAGCTGGAACAAAGCAAGCGCAGCCGCGGCTTCGTACGTCGGCGCGGCTCCGCCGCCGGCGCCGGAAACGGAAACTCAATCTCCGGCGCGTGTGTTATGAAGGCGCGTGAGCAGCTATTCCAGAAGGCCGTTACGCCGAGCGACGTTGGGAAACTGAACCGTTTGGTGATACCGAAGCAGCACGCGGAGAAGCACTTTCCTTTACAGAGCGCTGCTAACGGCGTTAGCGCGACGGCGACGGCGGCGAAGGGCGTTTTGTTGAACTTCGAAGACGTTGGAGGGAAAGTGTGGCGGTTTCGTTACTCGTATTGGAACAGTAGCCAGAGTTACGTCTTGACCAAAGGTTGGAGCCGGTTCGTTAAGGAGAAGAATCTGAAAGCCGGTGACACGGTTTGTTTTCAACGGTCCACTGGACCGGACAGGCAGCTTTACATCGATTGGAAGACGAGGAATGTTGTTAACGAGGTCGCGTTGTTCGGACCGGTTGTCGAACCGATCCAGATGGTTCGGCTCTTTGGTGTTAACATTTTGAAACTACCCGGTTCAGATTCTATCGCCAATAACAATAATGCAAGTGGGTGCTGCAATGGCAAGAGAAGAGAAATGGAACTCTTTTCATTAGAGTGTAGCAAGAAACCTAAGATTATTGGTGCTTTGTAG 1155 0.5662 MDAISCLDESTTTESLSISQAKPSSTIMSSEKASPSPPPPNRLCRVGSGASAVVDSDGGGGGGSTEVESRKLPSSKYKGVVPQPNGRWGSQIYEKHQRVWLGTFNEEDEAARAYDVAVQRFRGKDAVTNFKPLSGTDDDDGESEFLNSHSKSEIVDMLRKHTYNDELEQSKRSRGFVRRRGSAAGAGNGNSISGACVMKAREQLFQKAVTPSDVGKLNRLVIPKQHAEKHFPLQSAANGVSATATAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFQRSTGPDRQLYIDWKTRNVVNEVALFGPVVEPIQMVRLFGVNILKLPGSDSIANNNNASGCCNGKRREMELFSLECSKKPKIIGAL 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00857 384 Gene3D AP2/ERF domain 75 132 IPR036955 GO:0003700|GO:0006355
Gma01g00857 384 MobiDBLite consensus disorder prediction 1 80 - -
Gma01g00857 384 ProSiteProfiles B3 DNA-binding domain profile. 205 316 IPR003340 GO:0003677
Gma01g00857 384 Pfam AP2 domain 75 123 IPR001471 GO:0003700|GO:0006355
Gma01g00857 384 Pfam B3 DNA binding domain 205 313 IPR003340 GO:0003677
Gma01g00857 384 SUPERFAMILY DNA-binding domain 75 131 IPR016177 GO:0003677
Gma01g00857 384 CDD AP2 75 130 IPR001471 GO:0003700|GO:0006355
Gma01g00857 384 SMART rav1_2 76 137 IPR001471 GO:0003700|GO:0006355
Gma01g00857 384 Gene3D - 194 321 IPR015300 -
Gma01g00857 384 SUPERFAMILY DNA-binding pseudobarrel domain 203 311 IPR015300 -
Gma01g00857 384 SMART B3_2 205 316 IPR003340 GO:0003677
Gma01g00857 384 MobiDBLite consensus disorder prediction 1 32 - -
Gma01g00857 384 ProSiteProfiles AP2/ERF domain profile. 76 131 IPR001471 GO:0003700|GO:0006355
Gma01g00857 384 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 26 384 - -
Gma01g00857 384 CDD B3_DNA 204 301 IPR003340 GO:0003677
Gma01g00857 384 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 26 384 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00857 Gma-Chr1 27468011 27469365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00857 5 384 B3 DNA Binding Superfamily AT1G25560 61.757 7.08e-153 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Gma01g00857 B3 2.7e-28 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00857 01 27468011 27469365 Gma01g00857 01 27468011 27469365 ECH