Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00848 ATGCAAGCTCACCACCCTTTCTCCTACATATCCTCTTGTCCTGGTAGTAGTACTAGTGCCTTCTTGGAACCTCATCATCACCATCATCATGAAGTTGTGGATGAAGCCTCTATCTCCCTCTCTCTTGGCCCTCCTGGCCAACAACAACACAAAAACCACTACCAAGCCACCACTTCCTCCTCCTCTCACCACCCTTCTTCCATTCTGCACCACCATTACCAGCAAAATCCTAGTACTACTACTGCTACCACCTCTGATGATCATCATCACCAGAGAGGTGGTGTAACTGTGGCCCTTCACATTGGCCTTCCCAGTCCCACCACCACAACTTCTTCAACAAACAGTGCCACCACCCCAACTACTACTAGCAAGTTGCCTGATCTTCATTTGGCCTCTGCTGCCCCCAACATTCAGGGCCAGTATTGGATCCCTTCTCCTGCTCAAATCCTCATTGGCCCCACCCAGTTCTCTTGCACTGTCTGCAACAAAATGTTCAACCGTTTCAACAACATGCAGCAGATGCACATGTGGGGACACGGCTCGCAATACAGAAAAGGCCCCGAATCGCTTCGGGGCGCAAAGCCAGCATCCTCGATGCTGCGGCTTCCCTGCTACTGCTGCGCGGAGGGCTGCAAGAACAACATCGAGCACCCAAGGTCGAGGCCGCTGAAGGACTTCAGGACGCTCCAGACGCACTACAAGAGGAAGCACGGTGCGAAGCCGTTCGGGTGCCGGAAGTGCGGGAAGCCTTTTGCAGTGAGAGGTGACTGGAGGACGCACGAGAAGAACTGCGGGAGGCTCTGGTTCTGCATCTGCGGGTCTGATTTCAAGCACAAGAGGTCTCTCAAGGACCATGTTCGCGCCTTTGGGGATGGACATGCTCCGCACACTGTGGAGAGCTGTGATCGGGTGGGGGAGGATGAGGATGATGAGGAGTTGGAAGTGGAGGATGAGGAGGAGGAGGATTATCATAGTAATGATTTG 984 0.5356 MQAHHPFSYISSCPGSSTSAFLEPHHHHHHEVVDEASISLSLGPPGQQQHKNHYQATTSSSSHHPSSILHHHYQQNPSTTTATTSDDHHHQRGGVTVALHIGLPSPTTTTSSTNSATTPTTTSKLPDLHLASAAPNIQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGRLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDRVGEDEDDEELEVEDEEEEDYHSNDL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00848 328 MobiDBLite consensus disorder prediction 102 124 - -
Gma01g00848 328 PANTHER ZINC FINGER PROTEIN WIP2 1 324 IPR043584 GO:0003700|GO:0010468
Gma01g00848 328 MobiDBLite consensus disorder prediction 297 328 - -
Gma01g00848 328 SUPERFAMILY beta-beta-alpha zinc fingers 225 262 IPR036236 -
Gma01g00848 328 Coils Coil 301 321 - -
Gma01g00848 328 MobiDBLite consensus disorder prediction 304 328 - -
Gma01g00848 328 PANTHER ZINC FINGER PROTEIN WIP6 1 324 - -
Gma01g00848 328 MobiDBLite consensus disorder prediction 20 124 - -
Gma01g00848 328 MobiDBLite consensus disorder prediction 41 84 - -
Gma01g00848 328 Gene3D Classic Zinc Finger 200 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00848 Gma-Chr1 27150316 27152607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00848 34 304 C2H2 Transcription Factor Family AT1G13290 65.809 7.87e-118 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma01g00848 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00848 01 27150316 27152607 Gma01g00848 01 27150316 27152607 ECH
Gma01g00848 01 27150316 27152607 Gma02g00898 02 9362878 9364708 GST