Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00847 ATGCAATTTGCTCAGAAAATGCAACCCTTGAAAATGGGGTTCCTTCAGTACATCGAAGCATTGGAGGAAGAAAGAAGGAAAATTCAAGTTTTCCCTAAAGAGCTTCCTTTGTCATTAGAGCTTGTCACGCAAGCAATTGAGGCTTGTAGGCAGCAATTGGCTGGAACGGTAGCGGAGTACAATTTGAATGGCCAATCGGAGTGTTCGGAACAGACATCAACGGATGGACCTGTTTTTGAGGAGTTCATTCCTCTAAAGAAAAGGGCATCTCAAGATTCTGTTGAAGAAGAAGATGAAGATGAAGAACATTTTCATAAACACAAAAAAACCGCCACTGATAAAAAAAAATCAGATTGGCTCAGATCCGTTCAGTTGTGGAATCCCAATCCCCCTCCTACCAAAGAGGACGTTGTTGTGCCTAGGAAAACTGATGTTGTGGAAGTGAAGAGAAACGGTGGAGCTTTTCAACCGTTCCAAAGAGAGGAAAAAAGTGGTGATGCAAAGGCTAGTATTAATAATGATGCATCAGCAATTGGTAAAGCACCCTCTTCACCACCAGTGCCTGCTACAAGTTCTACAGGACCAGTGAGAGTAGAAAACAAAAAAGAAGAGAAAGGACAAGCTCAGAGAAAGCAACGCAGGTGTTGGTCACAGGAATTGCACAAGAGATTCTTGCATGCACTTCAACAACTTGGGGGTGCAGACTCTGCCACGCCTAAACAGATCAGGGAGCTGATGAAGGTTGATGGCCTAACCAATGATGAAGTCAAAAGTCATTTACAGAAATTTCGTCTTCACACTAGAAGAAGCCCCATAATCCACAACAATGCAAGTTCACAAGCAGGCCCTTTATTTCTTGTGGGGAACATTTTTGTTCAGCCACCAGAATATGCTGCAGTAGCAACCACCTCAACAGCATCTGGAGAGGAATTGACCACAGTTACTACTACTACTGCTCCAACTGGAATATATGCACCTGTGGCTGCACACCCTCCAGCTGTCACCCACACATTACCAATTATGAAGCAGAAGGAGCATTCACACTCTGAGGAAAGACCTAATCATAGTGTTCTTTCAAACTCACCTGCCTCATCATCCTCCACACACACCATCACAACTTCACCACCTGTCCCCAATTGA 1140 0.4404 MQFAQKMQPLKMGFLQYIEALEEERRKIQVFPKELPLSLELVTQAIEACRQQLAGTVAEYNLNGQSECSEQTSTDGPVFEEFIPLKKRASQDSVEEEDEDEEHFHKHKKTATDKKKSDWLRSVQLWNPNPPPTKEDVVVPRKTDVVEVKRNGGAFQPFQREEKSGDAKASINNDASAIGKAPSSPPVPATSSTGPVRVENKKEEKGQAQRKQRRCWSQELHKRFLHALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSPIIHNNASSQAGPLFLVGNIFVQPPEYAAVATTSTASGEELTTVTTTTAPTGIYAPVAAHPPAVTHTLPIMKQKEHSHSEERPNHSVLSNSPASSSSTHTITTSPPVPN 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00847 379 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 266 IPR006447 GO:0003677
Gma01g00847 379 Pfam Myb-like DNA-binding domain 213 262 IPR001005 -
Gma01g00847 379 SUPERFAMILY Homeodomain-like 209 269 IPR009057 -
Gma01g00847 379 MobiDBLite consensus disorder prediction 343 379 - -
Gma01g00847 379 MobiDBLite consensus disorder prediction 88 117 - -
Gma01g00847 379 Gene3D - 210 268 - -
Gma01g00847 379 MobiDBLite consensus disorder prediction 354 379 - -
Gma01g00847 379 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 373 IPR044787 GO:0003700|GO:0006355
Gma01g00847 379 MobiDBLite consensus disorder prediction 100 117 - -
Gma01g00847 379 MobiDBLite consensus disorder prediction 197 214 - -
Gma01g00847 379 MobiDBLite consensus disorder prediction 175 214 - -
Gma01g00847 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 268 IPR017930 -
Gma01g00847 379 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 4 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00847 Gma-Chr1 26864544 26866903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00847 1 329 G2-like Transcription Factor Family AT1G68670 46.884 2.79e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gma01g00847 Myb_DNA-binding 2.3e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00847 01 26864544 26866903 Gma01g00847 01 26864544 26866903 ECH
Gma01g00847 01 26864544 26866903 Gma02g00896 02 9310382 9312685 GST