Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00797 ATGAAGGTTTTCGTGAAGACTCTCAAGGGCACGCACTTCGAAATTGAAGTGAACCCTTCGGACACGCTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGAAAAGTTCTAAAGGATGGTACTACTTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTTATTGTAATTATGTTATCAAAGACTAAGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAGGCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCTGCTTCAACTGGAGCAACGCCTACACCTGTTACTGCCCCAGCTGCTCCTGCTTCTGCTGCAGCTCCTGCTCCTATATCTTCAGGCTCTGCTGTGCCAGAGTCTGATATATATGGGCAGGCAGCATCTAATCTTGTTGCTGGAAGTAACTTGGAGGGAACCATTCAGCAAATCCTTGACATGGGTGGAGGAAGCTGGGACAGGGATACTGTTGTTCGTGCTCTTCGTGCTGCTTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCCGGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGAGCCTGCAAGTGCTCAACCTGCAAATCCTCCAGCTGCTGCTCCACAGGCAGCACAACCAGCATCTGTTCCTTCTAGTGGACCTAATGCCAATCCTTTAGATCTCTTTCCCCAGGGCCTTCCAAATGTTGGGTCTGGTGCTGCTGGTGCTGGCTCTTTAGACTTTCTTCGCAACAGTCAACAGTTCCAAGCCTTACGCGCTATGGTACAGGCTAATCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGCGATTGATTCAAGAGCATCAAGTTGACTTCCTTCGCCTAATTAATGAACCCGTTGAAGGGGGTGAGGGAAATATACTGGGACAGCTAGCTAGTGCCATGCCGCAAGCAGTGACAGTCACCCCTGAGGAACGGCAAGCAATTGAACGTCTCGAAGCAATGGGATTTGATCGTGCAACTGTATTGGAGGTGTACTTCGCTTGTAACAAAAATGAGGAGCTGGCTGCCAACTACCTTTTAGATCACATGCACGAGTTTGATGAATAA 1179 0.4673 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKTKSSSGEGSTTSTAPSVKASATPTSTSVSAAPQAPASTGATPTPVTAPAAPASAAAPAPISSGSAVPESDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPPVTREPASAQPANPPAAAPQAAQPASVPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPVEGGEGNILGQLASAMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00797 392 CDD UBA1_Rad23_plant 155 204 - -
Gma01g00797 392 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 391 - -
Gma01g00797 392 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 159 202 IPR015940 -
Gma01g00797 392 Gene3D - 340 387 - -
Gma01g00797 392 SMART ubq_7 1 75 IPR000626 GO:0005515
Gma01g00797 392 TIGRFAM rad23: UV excision repair protein Rad23 1 391 IPR004806 GO:0006289
Gma01g00797 392 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 391 - -
Gma01g00797 392 Pfam UBA/TS-N domain 164 199 IPR015940 -
Gma01g00797 392 Pfam UBA/TS-N domain 348 383 IPR015940 -
Gma01g00797 392 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 345 386 IPR015940 -
Gma01g00797 392 PRINTS DNA repair protein Rad23 signature 293 315 IPR004806 GO:0006289
Gma01g00797 392 PRINTS DNA repair protein Rad23 signature 342 358 IPR004806 GO:0006289
Gma01g00797 392 PRINTS DNA repair protein Rad23 signature 359 373 IPR004806 GO:0006289
Gma01g00797 392 PRINTS DNA repair protein Rad23 signature 374 389 IPR004806 GO:0006289
Gma01g00797 392 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Gma01g00797 392 SMART uba_6 161 201 IPR015940 -
Gma01g00797 392 SMART uba_6 348 385 IPR015940 -
Gma01g00797 392 MobiDBLite consensus disorder prediction 79 141 - -
Gma01g00797 392 SUPERFAMILY UBA-like 328 391 IPR009060 GO:0005515
Gma01g00797 392 SUPERFAMILY XPC-binding domain 264 329 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gma01g00797 392 Gene3D - 258 323 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gma01g00797 392 Gene3D - 1 80 - -
Gma01g00797 392 Gene3D - 154 204 - -
Gma01g00797 392 MobiDBLite consensus disorder prediction 208 252 - -
Gma01g00797 392 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Gma01g00797 392 Pfam XPC-binding domain 267 322 IPR015360 GO:0003684|GO:0006289|GO:0043161
Gma01g00797 392 MobiDBLite consensus disorder prediction 79 120 - -
Gma01g00797 392 SMART CBM 265 308 IPR006636 -
Gma01g00797 392 CDD Ubl_Rad23 1 74 - -
Gma01g00797 392 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Gma01g00797 392 SUPERFAMILY UBA-like 158 215 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00797 Gma-Chr1 24559333 24568947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00797 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 1.12e-09 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00797 01 24559333 24568947 Gma01g00797 01 24559333 24568947 ECH