Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00794 ATGGTGGAGCCTCTTAATCAATCGACTCCTAAGATGAAAAAAATCAAACACAAGCCGAATTCGATTCATAACTCGAAAATAACGAGGAAACTGCGCATCATTTGCAATGATCCTAATGCTACAGACTCTTCATCTGATGAGGATGAGCATTTTAGGAATGTAAGGAAGATGAAGAGAACTGTGGTTGAGATTGCTCTTCCACCTGTTTCTGTAAACCCTGTCGTTGCAGATGAAACTAGTACTGAGAGCACAAACAATGATGAATTGAACAAGATGAAGAGGGTTTTGGGTAAAACTCCCACAGTCAAGAGGCAATCTTGTGGGAAATACAAAGGTGTTCGGATGCGGAAATGGGGCAAATGGGCTGCGGAGATTCGTGACCCTTTCAAGGGCGCGCGAATCTGGTTGGGTACTTTCAGCACTGCAGAAGAGGCTTCTCAAGCCTATAATGCCAGAAGGCTTGAATTTGAGGCCATGGCCAAGGCTCTATCTGATGAGAAGAGCAACAATGGCAGCAACAGCAGCAGCAACAACAATGTTGTTGCTTCTGCTGAAACTGTGGCTGCCACAGAAAATAACAGTTCCAACTATTGTGTTTCTTCTGCTGCAGGTTCTGTATCAGACTCCAAGTCTGCTTCTATGGATGAATCAGAGAGTGTGTTGTCACTCACATCACCATCTTCTGTGCTTGAATTGGATACATCTGCTTTCAATTTGATTGGGAGTGGTAAGGTTTCAAGCAATGAAGTTGTTGAGACTAAAGGATTGGAGGCTGAAGTTGCTGAGACTAAAAATTTGGCAGCTGAATTTGCCGAGCTGGAAATGCTGGAAATGCCGGATTTGAGTATGCTGAATGTGCCATCCCCATCTGCTGTCGCTGCTACTGCTGCTGCTCCATCTGAGTTTGAATTGGATTTGTTGGCATTTGTTGATTCCGAGTATGGATTTCATGATGAGCATGACTTTGATGATGATCTTGCTGCCCTGGAAGACTTTCACATTTGCGGTTTCGATGACAATGAGCCTAGCGAGCTTCCCGATTACGATTTTGACGACTTTGGTGCTGATGAGTTTGCTGGTTGGATTGAAGAACCCCTCAATATACCTTGCGTATAG 1116 0.4427 MVEPLNQSTPKMKKIKHKPNSIHNSKITRKLRIICNDPNATDSSSDEDEHFRNVRKMKRTVVEIALPPVSVNPVVADETSTESTNNDELNKMKRVLGKTPTVKRQSCGKYKGVRMRKWGKWAAEIRDPFKGARIWLGTFSTAEEASQAYNARRLEFEAMAKALSDEKSNNGSNSSSNNNVVASAETVAATENNSSNYCVSSAAGSVSDSKSASMDESESVLSLTSPSSVLELDTSAFNLIGSGKVSSNEVVETKGLEAEVAETKNLAAEFAELEMLEMPDLSMLNVPSPSAVAATAAAPSEFELDLLAFVDSEYGFHDEHDFDDDLAALEDFHICGFDDNEPSELPDYDFDDFGADEFAGWIEEPLNIPCV 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00794 371 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Gma01g00794 371 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Gma01g00794 371 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Gma01g00794 371 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 371 - -
Gma01g00794 371 MobiDBLite consensus disorder prediction 11 25 - -
Gma01g00794 371 PIRSF PTI6 3 247 IPR017392 GO:0003700
Gma01g00794 371 PIRSF PTI6 254 362 IPR017392 GO:0003700
Gma01g00794 371 SUPERFAMILY DNA-binding domain 109 156 IPR016177 GO:0003677
Gma01g00794 371 SMART rav1_2 109 171 IPR001471 GO:0003700|GO:0006355
Gma01g00794 371 MobiDBLite consensus disorder prediction 1 26 - -
Gma01g00794 371 CDD AP2 109 156 IPR001471 GO:0003700|GO:0006355
Gma01g00794 371 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 12 371 - -
Gma01g00794 371 Gene3D AP2/ERF domain 108 163 IPR036955 GO:0003700|GO:0006355
Gma01g00794 371 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00794 Gma-Chr1 24257452 24258567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00794 23 370 AP2-EREBP Transcription Factor Family AT1G68550 34.358 2.85e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma01g00794 AP2 2.4e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00794 01 24257452 24258567 Gma01g00794 01 24257452 24258567 ECH