Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00603 ATGGGAAGGGGTAAGGTACAGCTGAAGAGGATAGAGAACAAGATCAATCGCCAGGTAACTTTCTCCAAAAGGAGAAGTGGGTTGCTCAAGAAAGCTCATGAGATCTCTGTACTCTGTGATGCTGAGGTAGCTTTGATTGTCTTCTCTCACAAAGGAAAGCTCTTTGAGtatgctactgattcatgCATGGAGAAGATACTGGAACGCCACGAAAGGTATGCCTATGCAGAGAGGCAGCTAGTAGCAAATGATTCTGAAACACAGGGAAACTGGACCATTGAATACACTAGACTGAAGGCAAAGATTGACCTTTTACAGAGAAACCACAGGCACTATATGGGAGAAGATTTGGCTTCAATGAGCCTCAAAGAGCTTCAGAGTTTGGAGCAGCAGTTGGATACTGCTATCAAAAACATCCGCACAAGGAGGAATGATCTCATGTACGCTTCCATTTCTGAGCTTCAAAAAAAGGAGAAAATGATACAAGAGCAGAATAACATCCTTGCAAAGAAGATCAAGGAGAAAGAGCAGGCAGTAGCACAGCAAGCTGCACAATGGGAGCAGCCAAACTACAGGGTTGATACATCTTTCATGCCACAGCAGCAACCCCTTCGCACCAGTTTGAACATAGGCGGCAATAATTACAATCAGGAAGCTGCACCAGAACTAGGAAGGAATGGTCTTGACCTGACCCTGGAACCACTGTATTCTTGCCACCTTGGATGCTTCTGA 732 0.4413 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERHERYAYAERQLVANDSETQGNWTIEYTRLKAKIDLLQRNHRHYMGEDLASMSLKELQSLEQQLDTAIKNIRTRRNDLMYASISELQKKEKMIQEQNNILAKKIKEKEQAVAQQAAQWEQPNYRVDTSFMPQQQPLRTSLNIGGNNYNQEAAPELGRNGLDLTLEPLYSCHLGCF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00603 243 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma01g00603 243 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Gma01g00603 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma01g00603 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma01g00603 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma01g00603 243 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Gma01g00603 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma01g00603 243 Coils Coil 118 145 - -
Gma01g00603 243 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma01g00603 243 Coils Coil 151 181 - -
Gma01g00603 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma01g00603 243 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Gma01g00603 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma01g00603 243 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 222 - -
Gma01g00603 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 222 - -
Gma01g00603 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00603 Gma-Chr1 9666026 9670088 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma01g00603 K-box 6.6e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00603 01 9666026 9670088 Gma01g00603 01 9666026 9670088 ECH
Gma01g00603 01 9666026 9670088 Gma02g01103 02 12076880 12080691 GST