Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00506 ATGACATTGTACATGCCATTGTTCAGGTCATGTTCTACCTTAAGGTCCCTCTCCCAACTCCACGCCCACCTCGTTGTCACTGGTCTCCACAGCGACCCACTTGCCTCCACCAAGCTCCTCGAGTCCTACGCCCGAATGGGTTCTCTCCACTCATCAAGACTCGTTTTTGAAACCCACCCATCACCCGATTCCTTCATGTTCGGCGTCCTCATCAAGTGTTACCTCTGGCACCACCTGTTTGACCAAGTGGTTTCGCTTTACCACCACCACATTCAAAAGGGTTCACGCCTCACCCAAAACTGCACCTTCCTCTACCCTTCTGTTATCAAAGCTATTTCTGTCGTTGGGGGCTTGGTTGTGGGCAGGAAAGTGCATGGGAGGATTGTTAAAACTGGACTTGGCACTGATCATGTCATTGGCACTTCGTTGTTGGGAATGTACGGGGAATTGGGGTGTTTGAGCGACGCTCGCAAGGTGTTTGATGAAATTCGTGTAAGGGATTTGGTTTCATGGAGTTCGGTTGTTGCGTGTTATGTTGAGAATGGGCGGCCGAGAGAAGGGTTGGAGATGTTGCGTTGGATGGTTTCCGAGGGGGTTGGACCAGACTCGGTTACGATGCTCAGCGTAGCTGAGGCTTGTGGTAAAGTTGGTTGTCTGAGGTTGGCAAAATCGGTGCATGGATATGTGATCAGGAAAGAGATGGCTGGTGATGCGAGTTTGAGGAATTCTCTTATTGTTATGTATGGTCAGTGTAGTTACTTGCGTGGAGCAAAAGGGATGTTTGAAAGTGTCAGTGATCCCAGTACTGCTTGTTGGACTTCTATGATTTCATCGTGTAATCAAAACGGATGCTTTGAGGAGGCTATTGATGCTTTTAAGAAAATGCAGGAATCGGAAGTGGAAGTTAATGCAGTGACAATGATTAGTGTTCTGTGTTGCTGTGCTAGGTTAGGCTGGTTGAAAGAGGGAAAGTCTGTTCATTGCTTTATTTTGAGGAGAGAAATGGATGGTGCTGATCTTGATCTAGGGCCTGCACTGATGGATTTCTATGCTGCATGTTGGAAAATAAGCAGTTGTGAAAAGCTTCTCTGTTTAATTGGAAACAGCAGTGTTGTATCATGGAACACACTCATATCAATTTATGCACGGGAGGGTTTAAACGAGGAGGCCATGGTGCTCTTTGTATGTATGTTGGAAAAGGGGCTAATGCCGGACTCATTTAGCTTAGCAAGTTCAATTTCAGCTTGTGCAGGTGCTAGTTCAGTACGATTTGGACAGCAGATACATGGTCATGTCACGAAAAGAGGCTTCGCAGATGAATTTGTTCAGAACTCCTTGATGGATATGTATTCAAAATGTGGCTTTGTGGATTTGGCATACACAATTTTTGACAAGATTTGGGAGAAAAGCATTGTGACATGGAACTGTATGATTTGTGGGTTTTCACAAAATGGAATTTCAGTAGAAGCACTCAAGCTATTTGATGAGATGTGTTTCAATTGTATGGACATTAATGAAGTGACCTTCTTAAGTGCAATTCAAGCATGCTCCAATTCAGGTTATCTTCTGAAGGGAAAATGGATTCACCATAAGCTCGTTGTATCTGGTGTGCAGAAGGATCTTTACATTGATACAGCTCTGGTTGACATGTATGCCAAGTGTGGAGACCTTAAAACGGCTCAAGGTGTTTTCAATAGCATGCCAGAGAAAAGTGTGGTGTCATGGAGTGCCATGATTGCTGCATATGGCATACATGGTCAAATAACTGCTGCCACCACCCTCTTCACTAAAATGGTAGAGTCACATATTAAACCAAACGAAGTAACCTTCATGAATATCTTATCTGCCTGCAGGCATGCTGGATCAGTGGAAGAAGGGAAGTTCTATTTTAACTCAATGAGGGATTATGGCATAGTGCCTAATGCAGAACATTTTGCCTCTATAGTTGATCTTCTAAGCCGTGCCGGTGATATTGATGGAGCTTATGAGATAATTAAGTCAACATGTCAGCATATAGATGCTAGCATATGGGGTGCTTTGCTTAATGGGTGTAGAATACATGGGAGGATGGACTTGATTCATAACATCCATAAAGAACTTAGAGAAATAAGAACAAATGATACAGGATACTACACGTTGTTATCTAACATATATGCTGAGGGAGGAAACTGGTATGAATCCAGAAAGGTGAGATCAAGGATGGAAGGAATGGGACTGAAGAAGGTCCCGGGGTACAGTTCAATTGAGATAGATGATAAAATTTACAGGTTTGGAGCCGGAGATACTTCTTCTGCATGGCAAATGGATGAAATTTACAGATTTTTAGATAATTTTCAAAGTTTGGCACGGGAACAAGGATGTGATGTACAATGCTATGGTACAATGCATAGTAGTTTCATGTTTTCTGAGGATTTTAGTGTTTATAACTTGCAGAGAGAAACTAGCAATTGCATTTTGAACAAATCACTGAAACTAGTACCATTTTAG 2487 0.4294 MTLYMPLFRSCSTLRSLSQLHAHLVVTGLHSDPLASTKLLESYARMGSLHSSRLVFETHPSPDSFMFGVLIKCYLWHHLFDQVVSLYHHHIQKGSRLTQNCTFLYPSVIKAISVVGGLVVGRKVHGRIVKTGLGTDHVIGTSLLGMYGELGCLSDARKVFDEIRVRDLVSWSSVVACYVENGRPREGLEMLRWMVSEGVGPDSVTMLSVAEACGKVGCLRLAKSVHGYVIRKEMAGDASLRNSLIVMYGQCSYLRGAKGMFESVSDPSTACWTSMISSCNQNGCFEEAIDAFKKMQESEVEVNAVTMISVLCCCARLGWLKEGKSVHCFILRREMDGADLDLGPALMDFYAACWKISSCEKLLCLIGNSSVVSWNTLISIYAREGLNEEAMVLFVCMLEKGLMPDSFSLASSISACAGASSVRFGQQIHGHVTKRGFADEFVQNSLMDMYSKCGFVDLAYTIFDKIWEKSIVTWNCMICGFSQNGISVEALKLFDEMCFNCMDINEVTFLSAIQACSNSGYLLKGKWIHHKLVVSGVQKDLYIDTALVDMYAKCGDLKTAQGVFNSMPEKSVVSWSAMIAAYGIHGQITAATTLFTKMVESHIKPNEVTFMNILSACRHAGSVEEGKFYFNSMRDYGIVPNAEHFASIVDLLSRAGDIDGAYEIIKSTCQHIDASIWGALLNGCRIHGRMDLIHNIHKELREIRTNDTGYYTLLSNIYAEGGNWYESRKVRSRMEGMGLKKVPGYSSIEIDDKIYRFGAGDTSSAWQMDEIYRFLDNFQSLAREQGCDVQCYGTMHSSFMFSEDFSVYNLQRETSNCILNKSLKLVPF 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00506 828 Gene3D Tetratricopeptide repeat domain 95 223 IPR011990 GO:0005515
Gma01g00506 828 Gene3D Tetratricopeptide repeat domain 338 438 IPR011990 GO:0005515
Gma01g00506 828 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 400 777 - -
Gma01g00506 828 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 13 277 - -
Gma01g00506 828 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 261 404 - -
Gma01g00506 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Gma01g00506 828 Pfam E motif 698 749 IPR046848 -
Gma01g00506 828 Gene3D Tetratricopeptide repeat domain 487 625 IPR011990 GO:0005515
Gma01g00506 828 Pfam PPR repeat family 370 417 IPR002885 -
Gma01g00506 828 Pfam PPR repeat family 570 617 IPR002885 -
Gma01g00506 828 Pfam PPR repeat family 267 315 IPR002885 -
Gma01g00506 828 Pfam PPR repeat family 469 517 IPR002885 -
Gma01g00506 828 TIGRFAM PPR: pentatricopeptide repeat domain 608 642 IPR002885 -
Gma01g00506 828 TIGRFAM PPR: pentatricopeptide repeat domain 271 303 IPR002885 -
Gma01g00506 828 TIGRFAM PPR: pentatricopeptide repeat domain 169 202 IPR002885 -
Gma01g00506 828 TIGRFAM PPR: pentatricopeptide repeat domain 573 607 IPR002885 -
Gma01g00506 828 TIGRFAM PPR: pentatricopeptide repeat domain 372 405 IPR002885 -
Gma01g00506 828 TIGRFAM PPR: pentatricopeptide repeat domain 472 500 IPR002885 -
Gma01g00506 828 Pfam PPR repeat 169 199 IPR002885 -
Gma01g00506 828 Pfam PPR repeat 141 166 IPR002885 -
Gma01g00506 828 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 13 277 - -
Gma01g00506 828 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 261 404 - -
Gma01g00506 828 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 400 777 - -
Gma01g00506 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Gma01g00506 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 571 605 IPR002885 -
Gma01g00506 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Gma01g00506 828 Gene3D Tetratricopeptide repeat domain 626 770 IPR011990 GO:0005515
Gma01g00506 828 Gene3D Tetratricopeptide repeat domain 224 337 IPR011990 GO:0005515
Gma01g00506 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Gma01g00506 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 606 640 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00506 Gma-Chr1 7227897 7230383 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00506 01 7227897 7230383 Gma01g00506 01 7227897 7230383 ECH
Gma01g00506 01 7227897 7230383 Gma02g01037 02 11266137 11272728 GST