Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00454 ATGTCTGAGGTTGTTATTAAAGACTCTGCCATAAAGCTGTTTGGTAGAACAATTTCTCTGCCCCGCAACACCAAAAACGAGGTTTCTCCTGATGAACCTGCTCCTCCTGAAGATTCATCTTCATCTTTTCCACGTGAAGTGAGCTCCACAACGGAATATGATGCTGGGGATAAGAAACCATCAAGGAAAGAACTCACCTCAACACAAGAAGACGTGGAGGCCTCACACCAAACCCTAGAGGAAACAAAATCTCCGACATCATCATCATGCAATCTCGAGAACCCCAAGACCCCCTCAACAGAAAGAGAAACTTCCATTCTGAAATCCTTCAAAAACGGACACCAAAGCGACACAACAACAACATGCCCATCACAGGACAAAACTCCAAAGAAACCAGACAAGGTGCTTCCATGCCCTCGATGCAACAGCATGGACACCAAGTTCTGCTACTACAACAACTACAACGTCAACCAACCGCGCCACTTCTGCAAGCATTGCCAGAGATATTGGACCGCCGGAGGAACCATGAGGAACGTGCCAGTCGGTGCCGGCCGCCGCAAGAACAAGAACACTCCCTCTGTGTCGCATTTTCGCCAAATCATGGTGCCTGAGGGCCTTCAGAACGGATCATTGCACGGCGCTGTGTTGACCTTTGGATCAGATTCTCCTCTATGTGATTCCATGGCTTCTGTATTGAGCCTTGCTGAGAAAACAACACAAAATGGTGTCCTAAATGGTTTCCATTCACCTAATACTAATACTATTACTAGTAATAAAGGGGATGAATATTATGATACTGTTATGGGTTCAACTTTGAGTGAAAAGAGACACAATGCAACTACTAGTACTAACTCACATGAAAAATCATTGGATAATCATAAGAGTTATCATCATCAAGGTTTCACTCCTCAATTGTGCTTCCCAGGTTCTTCTTCTTCTTCTCCTTGGCCTTATCCATGGAACCCTACAAAGACTCCTTCAGCTTTTTGCAACCCTGTGCCATTCTACACTACACAAGCATTCTGGGGTTGCATGCCACCACCCTCTTGGAGTGTAAATTACCAATCTGCCCCTAGTTCTGGCCCAAATTCCCCTACCTTAGGGAAACACTCAAGAGATGGGGATATCTTGTTTCAAAAACCTAGCACAGACATGGCAGAAAATAACAACAACAACAACACCGTGTTGATACCAAAGACACTGAGAATTGATGACCCTACTGAAGCTGCAAAGAGCTCCATATGGTCAACACTGGGGATCAAGAATGAGAAGGGAAACTCCCTCAATGGAGGAGGGCTTTTCAAGGCATTTGCATCAAAGGGTAGTAGTGATGAGAAGAAGAATAACCATGTGATGATGGTTGAAGCATCCCTATCCCCGGTGTTGCAAGCCAACCCAGCAGCTTTGTCAAGGTCCCTTGTCTTCCATGAGAGGACATAA 1440 0.4535 MSEVVIKDSAIKLFGRTISLPRNTKNEVSPDEPAPPEDSSSSFPREVSSTTEYDAGDKKPSRKELTSTQEDVEASHQTLEETKSPTSSSCNLENPKTPSTERETSILKSFKNGHQSDTTTTCPSQDKTPKKPDKVLPCPRCNSMDTKFCYYNNYNVNQPRHFCKHCQRYWTAGGTMRNVPVGAGRRKNKNTPSVSHFRQIMVPEGLQNGSLHGAVLTFGSDSPLCDSMASVLSLAEKTTQNGVLNGFHSPNTNTITSNKGDEYYDTVMGSTLSEKRHNATTSTNSHEKSLDNHKSYHHQGFTPQLCFPGSSSSSPWPYPWNPTKTPSAFCNPVPFYTTQAFWGCMPPPSWSVNYQSAPSSGPNSPTLGKHSRDGDILFQKPSTDMAENNNNNNTVLIPKTLRIDDPTEAAKSSIWSTLGIKNEKGNSLNGGGLFKAFASKGSSDEKKNNHVMMVEASLSPVLQANPAALSRSLVFHERT 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00454 479 Pfam Dof domain, zinc finger 133 190 IPR003851 GO:0003677|GO:0006355
Gma01g00454 479 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 6 479 - -
Gma01g00454 479 PANTHER CYCLIC DOF FACTOR 2 6 479 IPR045174 GO:0003700|GO:0006355
Gma01g00454 479 ProSitePatterns Zinc finger Dof-type signature. 138 174 IPR003851 GO:0003677|GO:0006355
Gma01g00454 479 ProSiteProfiles Zinc finger Dof-type profile. 136 190 IPR003851 GO:0003677|GO:0006355
Gma01g00454 479 MobiDBLite consensus disorder prediction 79 126 - -
Gma01g00454 479 MobiDBLite consensus disorder prediction 14 134 - -
Gma01g00454 479 MobiDBLite consensus disorder prediction 51 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00454 Gma-Chr1 5866252 5870143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00454 7 478 C2C2-Dof Transcription Factor Family AT3G47500 38.697 2.04e-81 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma01g00454 zf-Dof 5.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00454 - - gmx:100775201 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00454 01 5866252 5870143 Gma01g00454 01 5866252 5870143 ECH
Gma01g00454 01 5866252 5870143 Gma06g01750 06 17801036 17804323 ECH
Gma01g00454 01 5866252 5870143 Gma04g01634 04 44438739 44441671 ECH
Gma01g00454 01 5866252 5870143 Gma05g00253 05 2303134 2305993 ECH
Gma01g00454 01 5866252 5870143 Gma17g00950 17 8101698 8105003 ECH
Gma01g00454 01 5866252 5870143 Gma19g00205 19 2685498 2688716 ECH
Gma01g00454 01 5866252 5870143 Gma20g00335 20 4942519 4945787 ECH
Gma01g00454 01 5866252 5870143 Gma02g00994 02 10614705 10617848 GST
Gma01g00454 01 5866252 5870143 Gma17g00950 17 8101698 8105003 PCT
Gma01g00454 01 5866252 5870143 Gma05g00253 05 2303134 2305993 PCT