Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00196 ATGTCACCCGATGACACACCACCTCCAAAGCCTGCCACAGCAAAAGACCAAGAGACTCAAAGTTCCGGTGGTGGCAGAAAAAGCTCCTCCACAAGGCCCCAAGAGCAAGGTCTCAAGTGTCCACGATGTGACTCACCTAACACCAAATTCTGCTACTACAACAACTACAGCCTCACACAGCCAAGGCATTTCTGCAAGACATGTAGAAGATACTGGACAAAAGGTGGGGCTTTGCGCAACGTCCCTATTGGCGGTGGTTGTAGAAAGAACAAGAAGGTGAAGTCATCAAGGCTCTCATGTGACTCCAAAGACTCTGGTTCCTCCTCTTCAGAACTTGGTGGCCTCAAATTCCTTCATTCTCTTTCTCCTTCCATGGACTTTCACCTTGGAGGGTTACCCTTCCCTAGGCTTCACCATCATCACCCTCCAACCCCTTACAACCACTTTTCCTCTTTTGGAGACACTTCTAGTGCTTCTTCATGTTTCAACCTTGATCCTTCTCCTGGCACCACCCCATCAAGTTCTTTTGCTGCTCTCAATAATTACCCTTTTTCTTACAATGGTGCAATCCAAGGTATGAGCTCTTTGAATGTTCATAGTGGCCTTGCCTCTTCCATTGAGTCTTTGAGTTCTATAAACCAGGACTTGCACTGGAAGCTGCAGCAGCAGCGATTGGCAATGCTCTTTGGTGGAGACAACAACAACCAGAAAGATCATAGTGGTGTTAACCAGATTGAGAACCTGGCACAGAAACCACAACCCATTATGTTTCAGAACCTTGAGATTTCAAAGCCAGGGACTTTCCCAGTTGGGAACTCCAGAAAAGAACAAGGTTCAAGTGGGGACACACACACGCCTTCAACCGAGTGGTTCTTTGGGAATTCTTATGCCTCAGTGACTCCTACACCTACAACTAGTAGTGGTGGCCCAGGGAATGATAATGCGAGCAATTGGAGTAGCGGTGGTGTCCATGCTTGGGGTGATGTGCCGCAGCAATATAGTGCTTTGCCCTAG 1014 0.4783 MSPDDTPPPKPATAKDQETQSSGGGRKSSSTRPQEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKSSRLSCDSKDSGSSSSELGGLKFLHSLSPSMDFHLGGLPFPRLHHHHPPTPYNHFSSFGDTSSASSCFNLDPSPGTTPSSSFAALNNYPFSYNGAIQGMSSLNVHSGLASSIESLSSINQDLHWKLQQQRLAMLFGGDNNNQKDHSGVNQIENLAQKPQPIMFQNLEISKPGTFPVGNSRKEQGSSGDTHTPSTEWFFGNSYASVTPTPTTSSGGPGNDNASNWSSGGVHAWGDVPQQYSALP 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00196 337 MobiDBLite consensus disorder prediction 13 36 - -
Gma01g00196 337 MobiDBLite consensus disorder prediction 1 40 - -
Gma01g00196 337 ProSitePatterns Zinc finger Dof-type signature. 40 76 IPR003851 GO:0003677|GO:0006355
Gma01g00196 337 MobiDBLite consensus disorder prediction 266 337 - -
Gma01g00196 337 MobiDBLite consensus disorder prediction 270 321 - -
Gma01g00196 337 Pfam Dof domain, zinc finger 36 92 IPR003851 GO:0003677|GO:0006355
Gma01g00196 337 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 337 IPR045174 GO:0003700|GO:0006355
Gma01g00196 337 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 17 337 - -
Gma01g00196 337 ProSiteProfiles Zinc finger Dof-type profile. 38 92 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00196 Gma-Chr1 2180239 2181252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00196 5 337 C2C2-Dof Transcription Factor Family AT5G65590 39.883 2.66e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma01g00196 zf-Dof 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00196 - - gmx:100780729 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00196 01 2180239 2181252 Gma09g01864 09 44248279 44249307 GST