Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1827 ATGGTTTTCTCTACCATTCCAGTTTATTTAGATCCTCCCAATTGGCAGCAGCAGCTAAATTATCATCAAACAAATGGCGGTACTGATAGCCCTCTGCTGCTTCCACCGTTACCCCCACAACCACAACCTCCTCATGTGGGAGATGGAGCCGGCTCAATCAAGCCGGGATCGATGGCTGATCGAGCCCGGCTAGCTAACATAGCGCCGCCGGAGGCAGCTCTGAAGTGTCCTCGGTGCGAATCTACCAATACTAAATTTTGCTACTTCAACAATTACAGCCTCTCTCAACCCCGGCACTTCTGCAAGACATGTAGGCGTTACTGGACAAGAGGGGGCGCTCTTAGGAATGTTCCAGTGGGTGGGGGATGCCGTAGAAACAAGAAGAACAAAAGCAGTCGCTCCAAATCTCCCAAACAGACCCTTTCCAATTCCTCAACCGCAATCCCCTCCACCGAGCTAGTTGGTCAAGTGCCGCAACCTTCCAACTTACCTTTCATGCCCTCTTTACAGAATCTGAGCCGCTATGGTGTGGGAAGCATGGGCCTAAACTTGCGTGAGATCCAAGGACAGACTGATCATATGGGGTTTCGCATTGCAAATAATTCAAGCGGTGGAGGAATGGATCTGTGGCGTTTACAGCAATTTCCTTTCTTGAATAGTTTTGAGTCAACTTCAGCTTCTGTTGAAATGCCGTCTGGTTTGGTTGGAGATGGCGGGCTTGGGAATATAGACGCAAGTTCTAGGGTTACTCAGCAGCCTCCAGTTAAATTGGAAGACCGCAGAGATCCAAATTTGTCAAGATCGCCTCTGAGTATGTCAGAAAATAACCAATACTATTCATGGACTGATTTATCAGGTCTTCCCTCTTCTTCCCCTAGCCATGTCTTGTAA 891 0.4848 MVFSTIPVYLDPPNWQQQLNYHQTNGGTDSPLLLPPLPPQPQPPHVGDGAGSIKPGSMADRARLANIAPPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKSSRSKSPKQTLSNSSTAIPSTELVGQVPQPSNLPFMPSLQNLSRYGVGSMGLNLREIQGQTDHMGFRIANNSSGGGMDLWRLQQFPFLNSFESTSASVEMPSGLVGDGGLGNIDASSRVTQQPPVKLEDRRDPNLSRSPLSMSENNQYYSWTDLSGLPSSSPSHVL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1827 296 ProSitePatterns Zinc finger Dof-type signature. 76 112 IPR003851 GO:0003677|GO:0006355
Glsi14g1827 296 Pfam Dof domain, zinc finger 73 128 IPR003851 GO:0003677|GO:0006355
Glsi14g1827 296 MobiDBLite consensus disorder prediction 118 150 - -
Glsi14g1827 296 ProSiteProfiles Zinc finger Dof-type profile. 74 128 IPR003851 GO:0003677|GO:0006355
Glsi14g1827 296 MobiDBLite consensus disorder prediction 135 150 - -
Glsi14g1827 296 MobiDBLite consensus disorder prediction 237 272 - -
Glsi14g1827 296 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 59 188 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1827 Glsi-ChrGlsi14 18501638 18502690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1827 16 281 C2C2-Dof Transcription Factor Family AT3G55370 42.157 4.58e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi14g1827 zf-Dof 1.7e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1827 14 18501638 18502690 Glsi04g0208 04 1343335 1344401 PCT