Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1747 ATGGATCCTTCCAGTGTGCTAAACCAGCAAATGTCTAGCGGCCAGTCACTGGAGAACATGTTAGCTTGCTCAAAAGCACAGCAAGAGAGGAAGCCAAGACCTCAGCCAGAAGAAGCACTTAAATGCCCAAGATGTGATTCCGCCAACACCAAGTTTTGTTACTACAACAATTACAGTCTTTCTCAGCCAAGATATTTCTGCAAGTCATGCAGGAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCGGTGGGCGGAGGCTGCAGGAAGAACAAGAGGTCCTCATCAAAGAGGGCTCAAGACCAAACACTCACGCCCAACAACAACCCACTCACTAGCCTCCCTCCACTATCTTATGATTCCAATGACCTCACCCTCGCATTAGCTAGGCTCCAAAAGCAATCGTGTGGGCAATTGGGTTTTGATGACCATGATCTTTCAATTTTGGGGAATCCCACAAGCACCCATTTTGATATTCTTGGTAATCCGGGCATGCACCCCTCGTCCACAAATCCTGGATTTTTAGATGCATATCGAAGTGGATTCATGGAAACCCAGAATAATCTGTACTGTGGATATGGAAATGGGGACATGGGAGAGGTGGATAATGGCAATGCTTGTGGGGTTGCGGTCACCGGAGAGATGATGCTCCCCTATGATCAAGAAACCAGTAATGCCGCGACTCAAGCAGTGACGGTCACTACCATCAAGCAAGAAATGTGTAATGGCAGAGAACAAAGTGAAAATAGGGTGTTGTGCGGTTTCCCATGGCAGCTCAATGGAGACATAAACATGGGGGAACTTGATTCAGGAAGAGCAAGCTGGAATGGTCTCGCTTCATCTTGGCATGGGCTTCTCCCAATAGTCCCCTAA 876 0.476 MDPSSVLNQQMSSGQSLENMLACSKAQQERKPRPQPEEALKCPRCDSANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSKRAQDQTLTPNNNPLTSLPPLSYDSNDLTLALARLQKQSCGQLGFDDHDLSILGNPTSTHFDILGNPGMHPSSTNPGFLDAYRSGFMETQNNLYCGYGNGDMGEVDNGNACGVAVTGEMMLPYDQETSNAATQAVTVTTIKQEMCNGREQSENRVLCGFPWQLNGDINMGELDSGRASWNGLASSWHGLLPIVP 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1747 291 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Glsi14g1747 291 MobiDBLite consensus disorder prediction 85 117 - -
Glsi14g1747 291 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Glsi14g1747 291 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 19 185 IPR045174 GO:0003700|GO:0006355
Glsi14g1747 291 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Glsi14g1747 291 MobiDBLite consensus disorder prediction 99 117 - -
Glsi14g1747 291 MobiDBLite consensus disorder prediction 1 23 - -
Glsi14g1747 291 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1747 Glsi-ChrGlsi14 17754560 17756033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1747 38 290 C2C2-Dof Transcription Factor Family AT2G28510 42.754 1.85e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi14g1747 zf-Dof 5.4e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1747 14 17754560 17756033 Glsi14g1747 14 17754560 17756033 ECH
Glsi14g1747 14 17754560 17756033 Glsi04g0294 04 1905511 1906976 PCT