Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0222 ATGTCTAAAGTGAGAGATCCTGCTATAAAGCTATTTGGAAGGAATATTCCGGTAGAGTCAACCCACAGCACCGATTCACTGTCTCAGACCCAGATTCCTCCTGTGCCTGAAGCCATGAACAGGTATGATAAATCAACAAGAATTGATGTAGATATTCCTTTCAGATCTGGGAAGCAGAATAATCCTCCAGAAGAAGCAAAAGGTATTGAAAACGTTTATGAAAGTCCTACTCTGGAAGTGGAGGCTAAAGTAATTCATAGAACTAAGGACTATAAGGCTGCTAGTAGAGATATAGATCCTCAAGAAAAAGTTTTCAAGAAGCCAGACAAGATCCTTCCATGTCCTCGTTGCAACAGCTTGGAGACAAAGTTTTGCTATTTCAACAATTACAATGTTAACCAACCTAGGCATTTCTGCAAAAATTGCCAGAGATATTGGACAGCTGGGGGGACAATTAGAAATGTTCCTGTGGGGGCTGGAAAGCGCAAAAATAAGCATTCGGTTTTGCCTATCGCCCCTGATGTGGTATCTCTCTCCCACACAGACTCCAACCATTGTAGCCACGTGCATCTCTCATCCAGTGGACTTCCCACCGCTTCAAGGCCTGTTGCAGGAATGGGGAATATCCCTAGTTTTGGGGGGGAAGCTCCTCTTTGTAAGACCCTAGAAACTGTGTTAAATCTAAAAGGCCAGAAAAAGATTGATGTTAACTCCTCCACTGTCGGAGATGATAGCAAAGAGCCTTCCAGTTCCTCCTTGAGAGCTGCTGAATCCAGGGAGAATGAATTCTCAGAAAATGGAATAGAGCAGTTAGGTTTGCCACAAGACTGTAATGGTTTTAATCCTTTACATCCACTTCATTATTATCCTGTACCTCCATGGGCTTGCCAATGGAGCCCATGTTGGAATCAAGTGGTGTATAGACCCAATAGCATAACTCCGAGTCCTGCTCATATGGGTTCTGCAACCATGATGGCAGTTCCAGGTTTCTCTGCACCAACAATAGAATTATCAGCAGCACCTTCTTTATATTGGGGTTGCTTGCCAAGCTGGACTGGCCAGAAGGAAGAGTCTCCATTGGTTGGATCTACATTTAGTGGCATCCCATCACCTTCATCTTCAACTAGCAACAGTGTTTGTTCTGGTACCAAGTCTCCAACCTTAGGAAAACATTCTAGAGATGTAAGTACTCAGGCAGAAGATACAATGAAACAGAATATTTGGGTACCTAAGACTTTAAGAATTAATGATCCAGAAGAGGCTGCTAGGAGTTCCATATGGTCTACTCTTGGCACAAAGCCTGAACAGAACAAACCCATTATCAAAGGCAGTGTTTTTAAATCTTTTGAACCTAAGTCAGATGCCAGTTCTCATATTTCAGATACTAATCAAATTCTAAGTGCAAACCCTGCTGCTTTCTCTCGCTCTGAATCATTTCAGGAAAGAATGTAA 1452 0.4263 MSKVRDPAIKLFGRNIPVESTHSTDSLSQTQIPPVPEAMNRYDKSTRIDVDIPFRSGKQNNPPEEAKGIENVYESPTLEVEAKVIHRTKDYKAASRDIDPQEKVFKKPDKILPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNVPVGAGKRKNKHSVLPIAPDVVSLSHTDSNHCSHVHLSSSGLPTASRPVAGMGNIPSFGGEAPLCKTLETVLNLKGQKKIDVNSSTVGDDSKEPSSSSLRAAESRENEFSENGIEQLGLPQDCNGFNPLHPLHYYPVPPWACQWSPCWNQVVYRPNSITPSPAHMGSATMMAVPGFSAPTIELSAAPSLYWGCLPSWTGQKEESPLVGSTFSGIPSPSSSTSNSVCSGTKSPTLGKHSRDVSTQAEDTMKQNIWVPKTLRINDPEEAARSSIWSTLGTKPEQNKPIIKGSVFKSFEPKSDASSHISDTNQILSANPAAFSRSESFQERM 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0222 483 ProSiteProfiles Zinc finger Dof-type profile. 112 166 IPR003851 GO:0003677|GO:0006355
Glsi14g0222 483 MobiDBLite consensus disorder prediction 236 257 - -
Glsi14g0222 483 ProSitePatterns Zinc finger Dof-type signature. 114 150 IPR003851 GO:0003677|GO:0006355
Glsi14g0222 483 PANTHER CYCLIC DOF FACTOR 2 1 482 IPR045174 GO:0003700|GO:0006355
Glsi14g0222 483 MobiDBLite consensus disorder prediction 361 392 - -
Glsi14g0222 483 MobiDBLite consensus disorder prediction 236 261 - -
Glsi14g0222 483 Pfam Dof domain, zinc finger 109 166 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0222 Glsi-ChrGlsi14 2863063 2865371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0222 4 481 C2C2-Dof Transcription Factor Family AT5G39660 32.514 7.64e-65 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi14g0222 zf-Dof 5.4e-32 No_clan