Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1150 ATGCGGGAAAGTAAAGACCCTGCAATTAAGCTCTTCGGCCAGAAGATTCCCTTGGCCTGTGAAGGTCAGCTTCCTATCCTTGTCGCTGACGACTCCGCCTCGCCGGTGTCCGTGGAGATGGACGCACAAGGAGGAGGAGGAGAAGAAAGAGACGGTGATGATGGAGAACAACAAAATCCAGAAAAGGAGAAGGACGAAGATGACAAGGATCCTGCCCCTGGAAAAGCTACTGACAAGGAGAAAGAGGCTGATTATCCTCTAAACGCAGAAGAGACTAAGAATTTAGACAGCTTGCCAGAGGCTAGTGTGAACCCAAAAACACCTTCCATAGATGAAGAGATTGCAAAATCAAAAAGTGGCAACTCAGAGAAGGAGCAAAGTGATGCAACCAACTCTCAAGAGAAAACCCTGAAGAAGCCGGATAAAGTAATTCCATGTCCCCGCTGCAATAGCATGGACACTAAATTCTGTTACTATAATAATTATAACATCAATCAGCCTCGTTATTTCTGCAAAGCCTGTCAAAGATACTGGACGGCGGGTGGTACCATGAGGAATGTACCAGTAGGAGCAGGACGAAGAAAGAACAAGAACTCTGCCTCGCATTATCGTCACATCAGCATTTCTGAGGCTCTACAGGCAGCTAGAATTGATGCTCCAAATGTAACTCATCTTCCCACGTTAAAAGGCAATGGTAGAGTCCTCAGTTTTGGATTAGATGCACCAATATGTGATTCTATGGCATCTGTCCTGAACCTTGCAGAGAAAAAAGTTCTGAATGGTGCAAGAAACGGGTTTCATAGCATTGAGGATCAAAGAATTCCCGTTCATAGAAAAAGTGGGGAAAATGGTGAGGACTGCTCAATCGCATCTTCCATAAAGGTTTCGAACATGGAAGAAAGTAGCAAAAACATTTCCCAAGAATCGCTGCTCAGAAATGGTGGTTTTCCTCCTCAAATTCCATGTCTTCCTGGCGTTCCTTGGCCTTATCCCTGGAATTCTCCAGTTCCCTCACCTACTTTTGTTCCTCCAGGATTTCCCCTGTCATTCTATCCTGCAGCCGTTTGGAATTGTGGTGTGCCAGGCAATTGGAATATACCCTGGTTTTCCTCACATTCCACTGTTCCGAACCCAAAGTCTCCAAGCTCAGGTCCAAATTCTCCAACACTGGGGAAGCACTCGAGGGAGGGTGACATGATTAAACCAGACTATTGGCAAAAAGAAGAAGCATCAAAACGGAGAAACGGGTGTGTTTTGGTTCCCAAAACTTTAAGAATTGATGATCCAAGTGAAGCTGCGAAGAGTTCCATATGGGCGACTCTAGGAATTAAGAACGAATCAGCCAGTGGGGGAAGTATGTTCAAGGCCTTCCAATCAAAGAAGAATGAAAAGAATCACGTGGTTGAAACCTCTCCAGTGTTGCGGGCTAACCCTGCAGCTTTGTCTAGATCCCTTAACTTTCATGAGAACACCTGA 1476 0.4546 MRESKDPAIKLFGQKIPLACEGQLPILVADDSASPVSVEMDAQGGGGEERDGDDGEQQNPEKEKDEDDKDPAPGKATDKEKEADYPLNAEETKNLDSLPEASVNPKTPSIDEEIAKSKSGNSEKEQSDATNSQEKTLKKPDKVIPCPRCNSMDTKFCYYNNYNINQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHISISEALQAARIDAPNVTHLPTLKGNGRVLSFGLDAPICDSMASVLNLAEKKVLNGARNGFHSIEDQRIPVHRKSGENGEDCSIASSIKVSNMEESSKNISQESLLRNGGFPPQIPCLPGVPWPYPWNSPVPSPTFVPPGFPLSFYPAAVWNCGVPGNWNIPWFSSHSTVPNPKSPSSGPNSPTLGKHSREGDMIKPDYWQKEEASKRRNGCVLVPKTLRIDDPSEAAKSSIWATLGIKNESASGGSMFKAFQSKKNEKNHVVETSPVLRANPAALSRSLNFHENT 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1150 491 MobiDBLite consensus disorder prediction 28 142 - -
Glsi13g1150 491 PANTHER CYCLIC DOF FACTOR 2 1 491 IPR045174 GO:0003700|GO:0006355
Glsi13g1150 491 MobiDBLite consensus disorder prediction 111 142 - -
Glsi13g1150 491 MobiDBLite consensus disorder prediction 44 89 - -
Glsi13g1150 491 MobiDBLite consensus disorder prediction 374 398 - -
Glsi13g1150 491 ProSitePatterns Zinc finger Dof-type signature. 146 182 IPR003851 GO:0003677|GO:0006355
Glsi13g1150 491 ProSiteProfiles Zinc finger Dof-type profile. 144 198 IPR003851 GO:0003677|GO:0006355
Glsi13g1150 491 MobiDBLite consensus disorder prediction 374 390 - -
Glsi13g1150 491 Pfam Dof domain, zinc finger 141 198 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1150 Glsi-ChrGlsi13 29147617 29150254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1150 1 489 C2C2-Dof Transcription Factor Family AT3G47500 47.619 8.05e-126 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi13g1150 zf-Dof 3.6e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0853 02 5480703 5482893 Glsi13g1150 13 29147617 29150254 ECH
Glsi13g1150 13 29147617 29150254 Glsi13g1150 13 29147617 29150254 ECH