Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1057 ATGCAGGAAATACATTCTATCGGAGGAGGTGGATTTTTAGGCGGCGGGGGAGGAGACCGCAGGCTCAGGCCTCAACACCGCCAGAATCACCAGCCTTTGAAGTGCCCCAGGTGTGACTCCCTCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCTCAGCCGCGCCATTTCTGCAAGAGCTGCCGTAGATACTGGACCAAAGGAGGCGTCCTTCGCAACGTTCCTGTCGGTGGCGGTTGCCGGAAATCCAAGCGCTCCAAGCCCAAAACGCCAACCTCAGAAATTGCTGCTACACCAGCACCTCCGCCGCCATCGTCGCAACCGCCACAGCAAGAGCTTAATAAGTCGAACTCTCATTCCAGTAGCGAAAGTTCCAGCCTAACCGCCGCCGACACGGAGGCAGCATCGGCGCCTTCGTCGTCCAACTGTGAGTTATTGGAGAATATGCACGAGTCCAAGTTCTTCAAAAATCAGAGTTCGAACCCTGGTTTCGAGACGATGGGGATGATGGAACAAGGAGAGGACTGTGGTATTTTCTCCGAGATAGGGAGCTTTACGAGCTTGGTCACTTCGACGAACGAGGCAATGACGTTTGGATTTGGTAATATTGCGGAAGCGTCGCCGTTTCGGTTCGGTAACACTCATCAGGGGATGGGGAATGATCCGTTATCAGGTGACTGGCAACCACAGCATAATGGGATGGGCATGAGTAGCCCTCATCAGGACTTGAAGATGCCGGAGATCATCATGCCCGGGACGTCGTTGCTCGATCAGACGCTCCCGGTTGATTTGTCGGCGCTGCAAAGTAAAACCGGGAATGGAGGTTTCGGATCGTTGGATTGGCAAGGAAGCGCTGATCAAGGTTTGTTTGATCTTCCTAACACCGTAGATCATGCTTACTGGAATCACACTAACTGGACTGATCAAGACAATCCTAGTCTCTTTCATCTTCCCTGA 963 0.5254 MQEIHSIGGGGFLGGGGGDRRLRPQHRQNHQPLKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKSKRSKPKTPTSEIAATPAPPPPSSQPPQQELNKSNSHSSSESSSLTAADTEAASAPSSSNCELLENMHESKFFKNQSSNPGFETMGMMEQGEDCGIFSEIGSFTSLVTSTNEAMTFGFGNIAEASPFRFGNTHQGMGNDPLSGDWQPQHNGMGMSSPHQDLKMPEIIMPGTSLLDQTLPVDLSALQSKTGNGGFGSLDWQGSADQGLFDLPNTVDHAYWNHTNWTDQDNPSLFHLP 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1057 320 Pfam Dof domain, zinc finger 31 87 IPR003851 GO:0003677|GO:0006355
Glsi13g1057 320 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 189 IPR045174 GO:0003700|GO:0006355
Glsi13g1057 320 MobiDBLite consensus disorder prediction 97 111 - -
Glsi13g1057 320 ProSitePatterns Zinc finger Dof-type signature. 35 71 IPR003851 GO:0003677|GO:0006355
Glsi13g1057 320 ProSiteProfiles Zinc finger Dof-type profile. 33 87 IPR003851 GO:0003677|GO:0006355
Glsi13g1057 320 MobiDBLite consensus disorder prediction 1 34 - -
Glsi13g1057 320 MobiDBLite consensus disorder prediction 77 143 - -
Glsi13g1057 320 MobiDBLite consensus disorder prediction 112 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1057 Glsi-ChrGlsi13 28543873 28544835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1057 19 317 C2C2-Dof Transcription Factor Family AT5G60850 42.492 1.73e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi13g1057 zf-Dof 3.8e-33 No_clan