Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0197 ATGGTCTTCCCATCTGTTCCTGTTTATCTAGATCCACTCAACTGGCCACAACAGCAAACTAATCAGCAGTCAGGAGTAGGCGTCCAGAATCCCCAGCTTTCATATCCGCCGCAGCCGCCACCTTCAACAGTTGCTGTTGGAGGTGGCAGCCAACTGCACCAAGGCTCCAACAGACCAGGATCAATGGCTGATCGAGCTCGGCAAGCCAAGATACAGCCGCCAGAAGCAGCACTCAAGTGCCCACGATGTGAATCAACAAATACCAAGTTTTGCTACTACAACAATTATAGCCTCTTACAACCACGCCACTTCTGCAAGACTTGCCGACGTTACTGGACAAGAGGAGGTACAATGAGAAACGTCCCGGTTGGAGGTGGCTGCAGAAGGAACAAAAGAAGCAAAGGAAGTAGCAGCAGATCAAAGTCTCCGATCAAAGATGATCCTCAAGCTAGTTCCAGCACCGCAAGGGCAAATTCTTCTAGTACCTGTACTACTAATGCAATAGGCCATTTGCCAACCCTAGCACCATCTCAAATGCCATTATTTCCCACTTCACATCACTATAATGACTACTTTTCTAAAGGCATGGGCTTACATTTTGGGGCAATTCCACCCCCGGTGGTGGTAGCAAATGGCAATACTGCTAGCAGCATCGGTTTTGAATTCCAAATTGGCACTAGTTCTGGGGCAAATAATTGTGGTTCTGTGTTGCCAAATGGCCTTATTGAGCAGTGGAGGCTGCCAAATCAACAAGTTCATCAGCAACAGTTTCCTTTCTTGAATGACTTGGAAACACAAGCACAAATTGGGTTATCTCAGTTTGTAGGAGAAAATGTTGATGAACAGCCAAGTTACGTGGGGGACAGAAGTAGACTTTGGTCCAAGACATTGGATTCTGATTCTAGTGTTAGGGAAATGCCTCACGAAGTTTCTTCGGTGAGAAAAGTGGATGAAAATCAAGGATTCAGCTTGTCAAAAAATCTTCTGGGTAATTCAGGAAATGATCAGTTTTGGGCTGCAAGTGGCAATACGTGGAATAACATTCCCAGTTTCACCTCTTCCACAAGCCATCTGTTGTAA 1080 0.4593 MVFPSVPVYLDPLNWPQQQTNQQSGVGVQNPQLSYPPQPPPSTVAVGGGSQLHQGSNRPGSMADRARQAKIQPPEAALKCPRCESTNTKFCYYNNYSLLQPRHFCKTCRRYWTRGGTMRNVPVGGGCRRNKRSKGSSSRSKSPIKDDPQASSSTARANSSSTCTTNAIGHLPTLAPSQMPLFPTSHHYNDYFSKGMGLHFGAIPPPVVVANGNTASSIGFEFQIGTSSGANNCGSVLPNGLIEQWRLPNQQVHQQQFPFLNDLETQAQIGLSQFVGENVDEQPSYVGDRSRLWSKTLDSDSSVREMPHEVSSVRKVDENQGFSLSKNLLGNSGNDQFWAASGNTWNNIPSFTSSTSHLL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0197 359 MobiDBLite consensus disorder prediction 15 72 - -
Glsi12g0197 359 MobiDBLite consensus disorder prediction 119 163 - -
Glsi12g0197 359 ProSitePatterns Zinc finger Dof-type signature. 80 116 IPR003851 GO:0003677|GO:0006355
Glsi12g0197 359 Pfam Dof domain, zinc finger 77 132 IPR003851 GO:0003677|GO:0006355
Glsi12g0197 359 ProSiteProfiles Zinc finger Dof-type profile. 78 132 IPR003851 GO:0003677|GO:0006355
Glsi12g0197 359 MobiDBLite consensus disorder prediction 142 163 - -
Glsi12g0197 359 MobiDBLite consensus disorder prediction 15 32 - -
Glsi12g0197 359 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 62 246 IPR045174 GO:0003700|GO:0006355
Glsi12g0197 359 MobiDBLite consensus disorder prediction 44 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0197 Glsi-ChrGlsi12 5245500 5246768 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0197 29 358 C2C2-Dof Transcription Factor Family AT3G55370 39.130 1.95e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi12g0197 zf-Dof 4.9e-32 No_clan