Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2424 ATGGGTTTGAGTTCTAAGCAGGTTTCTAGTAGTGGGATTGATTGGAACCAGGCCTTACTGCAGGCTCAAAACTTGGAGCTTCCAAAGCCTTCCGTGATGAAGAAACAGCAGCAACAACTACAAACCCAGCAAACATCAGAGCCTTTGAAGTGCCCAAGATGTGATTCTATAAACACCAAGTTCTGTTACTACAACAACTACAACAAGTCCCAGCCTCGCCATTTCTGCAGAACCTGCAAGAGGCACTGGACTAAAGGTGGAACTTTACGAAATGTTCCGGTTGGTGGTGGCCGGAAGAATAAGCGGGCCAAAAAATCAACCACCGCAGCCTCTTCCACCACCGCCACCACCATCACTACCACCTCTATCACCACCCCAATTGGCAATACTGATGGGGGGTTGAGGCAGAGTACTCTTCCTCTTGCCCGGAGTGATAATCAGAAAAGCATAGCTCCATCTCTCTACCCAGCTCTGATTCGTCCACCAACAACATCCTTGCAGCCACAGCAGAATCTGATGAACACCAGAGACTCACAAAGTAAAGATTTTGGGATTGGAAATGGCATCTTCATGAGTTCAATTCTGCCTCTTCCTCAAAACCAGAGCCTGCTCTTCCCCTTCTCAAGCTCAAGTTCTTCTTTTGACACAAACCCATGTTCAGTTTCAACTTTGAGATCCTCCAATGTTTATAACTATGGGGAAGAGCTGAAAACAATGGAGGAGCCCAGCTCTGGAGGAACTAACACGCAGCCATGGGAGATAGCTTCAACAAGCGCTGGCATGGAAATGTCAAACTATTGGAGTTGGGAGGACCTGGATTCTTTGGTCTCCACTGATCTAAATGTTCCCTGGGATGATTCTGATATAAAGCCCTGA 876 0.4715 MGLSSKQVSSSGIDWNQALLQAQNLELPKPSVMKKQQQQLQTQQTSEPLKCPRCDSINTKFCYYNNYNKSQPRHFCRTCKRHWTKGGTLRNVPVGGGRKNKRAKKSTTAASSTTATTITTTSITTPIGNTDGGLRQSTLPLARSDNQKSIAPSLYPALIRPPTTSLQPQQNLMNTRDSQSKDFGIGNGIFMSSILPLPQNQSLLFPFSSSSSSFDTNPCSVSTLRSSNVYNYGEELKTMEEPSSGGTNTQPWEIASTSAGMEMSNYWSWEDLDSLVSTDLNVPWDDSDIKP 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2424 291 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Glsi11g2424 291 MobiDBLite consensus disorder prediction 92 113 - -
Glsi11g2424 291 Pfam Dof domain, zinc finger 48 102 IPR003851 GO:0003677|GO:0006355
Glsi11g2424 291 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Glsi11g2424 291 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 35 219 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2424 Glsi-ChrGlsi11 16994797 16995672 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2424 33 121 C2C2-Dof Transcription Factor Family AT5G60850 57.303 2.44e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi11g2424 zf-Dof 1.8e-31 No_clan