Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2353 ATGGTGGTCATCCCTCCAACGAATAACCAATCGCCACAGAGTCAAATCATTGATGAACAAAAGGTCTCGATTGGTTCCTCTGGTAGGATAATGGAAAAACCAGGGCAAGAACTTCTCCAGCAGCAGCAACAGTCTCTCAAGTGCCCCCGCTGTGATTCCTCAAACACTAAATTCTGCTACTACAACAACTATAGCTTGTCTCAGCCAAGGCACTTCTGCAAAGCCTGCAAGCGATATTGGACAAGAGGAGGAACTCTCAGAAACGTTCCTGTTGGAGGTGGCTGCAGAAAAAACAAGCGTGTGAAGCGCCCAACCTCCTCCGCCATTGATACTTCTTCTTCAGCTCCTATTCCTAGTGCCAATACAAGCCTTCCTTCCCAACCCCAGATCGATATCCATCCTCTATTTTATGGGTTAACCAGTAACTCCTGTGATATGAATCTTCCATTTGCAAGGTTCAATTCTAGAGTCTCCAGAGTAGAAACTGTCTCTGGGTATGATCTTCAGCCTCAGCTGAATGCCCTTGGTTTGGGATTTTCATCTGGGATAATGTCCAGTGAAGCTGGTGATAATGGTTATCCAAATGGGTATACTTCAAATAATTCACTTCTTTCAAGTTATAGTTCTATCTTTGGACGTTCTTCTTCAAGTTCTGCATCCAATTCTCCAATTATGGCTTCCCTTCTGCAGCAACAAAAATTCATCAATGGTGGTTTGAAGGATGGTCCTGCCACTAACAGTACTTTCCAGGGCTTAGCCCCACTAGAAGAGATGCAAATAGCAGGCAATAATGGCAGTAGTGAGGCAGAGATGGTTGCTTTAAAAGAAGTGAAAGTTGAAGAAAGGCAAAGGAGGTTGGAGTGGAATAATATTGGTGCTTGCCAAAACCAGATCGAGCATGGTGGGGGCTTGTCCGATTATGCACCTTATTATTGGAACGCAGCAGCTGCTACAACAACAGCTATGGGTGCTTGGAATGATCAAACAAACAACGTTGGCCCTTCAGTCACTTCTCTGATCTAG 1023 0.4467 MVVIPPTNNQSPQSQIIDEQKVSIGSSGRIMEKPGQELLQQQQQSLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPTSSAIDTSSSAPIPSANTSLPSQPQIDIHPLFYGLTSNSCDMNLPFARFNSRVSRVETVSGYDLQPQLNALGLGFSSGIMSSEAGDNGYPNGYTSNNSLLSSYSSIFGRSSSSSASNSPIMASLLQQQKFINGGLKDGPATNSTFQGLAPLEEMQIAGNNGSSEAEMVALKEVKVEERQRRLEWNNIGACQNQIEHGGGLSDYAPYYWNAAAATTTAMGAWNDQTNNVGPSVTSLI 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2353 340 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Glsi11g2353 340 MobiDBLite consensus disorder prediction 105 126 - -
Glsi11g2353 340 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Glsi11g2353 340 Pfam Dof domain, zinc finger 44 100 IPR003851 GO:0003677|GO:0006355
Glsi11g2353 340 MobiDBLite consensus disorder prediction 93 126 - -
Glsi11g2353 340 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 35 215 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2353 Glsi-ChrGlsi11 16470929 16472147 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2353 46 340 C2C2-Dof Transcription Factor Family AT1G28310 42.722 4.95e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi11g2353 zf-Dof 2.4e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2353 11 16470929 16472147 Glsi11g2353 11 16470929 16472147 ECH
Glsi11g2353 11 16470929 16472147 Glsi11g2353 11 16470929 16472147 PCT