Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1954 ATGTCGGAAGCAAAAGACCCGGCGATCAAACTCTTTGGGAAGACGATCCCGCTGCCGGAGATCCCGGCCCGATCCGGAGACTCTGTCGGAGCTCCACTTTCGTCTTCTGGGGATATTGTTGCTGATAGTATCGATCAGAATCACGCTTGTTCCACCAACTCATCGCGAGACTCCTATGGCAACAGGGATGGAGAACAGCAAGACACTGGCAAGGACGATAAGATGGAAGATGGAGCCCACGTTCAATCTGCAGAAGAGTTCACTAATCCAGATGCAGCCTTAAGGGCAGGTGAAGAATCTATTACAAACTCCATTGAGAAGGAGGCTACTACATTGAAGAATTTAAAGTCTGAAGAAGAACAGAGTGAGACAAGTAATTCACAGGAGAAGACCCTGAAAAAGCCAGACAAAATACTGCCTTGCCCCCGCTGTAATAGCATGGACACCAAGTTCTGCTACTACAATAATTACAATGTCAACCAACCCCGCCACTTCTGCAAGAACTGCCAGAGATACTGGACTGCTGGTGGGACCATGAGGAATGTGCCGGTTGGTGCTGGTCGCCGGAAGAACAAGAACTCTGCTTCTCACTTTCGCCAGATAACTGTCTCTGAAGCACTCCAGAATGCTCGGACAGACTTGCCAAATGGAGTGCATCATCCTTCCTTGAAGTCTAATGGCACAGTCCTTACATTTGGGTCTGATATGCCCTTGTGTGAATCAATGGCATCTGTTTTGAACCTTGCCGATAAAACAATGCATAATTGCACAAGAAATGGTTTTCATAAACCTGAGGAACTTAAAATTCCTGTTCCCTATGCCGGTGGAGAGAAAGGGAATGATCATTCCAATAAATCTTCTGTGACGTCAACAAAGCCAATAGATGATACTAACATCAACAGGTCACAAGAACAAGTTATGCAGAATTGTCAGACTTTCCCACCTCAAGTTCCCTACTTTCCTGGGACCCCTTGGCCTTTCCCATGGAATCCAGCACAGTGGAGCTCTCCTGTACCGCCAACTGCATTTTGCCCTCCAGGATTTACCATGCCATTTTATCCTGCACCAGCATATTGGGCTTGTACCGTATCAGGTAACTGGAACATCCCATGGCTAGCTCAGCCATCATCACCAAACAGTGCAGCCCCTAGTTCTGGCCCTAACTCTCCAACGTTGGGTAAACATTCAAGGGAAGAAAACATGCTCAAATCAAATGACTCAGGAGAAGAGGATGAACAAAGAAAAGAAAATAATAAAGAAAAGTCTCTCTGGGTTCCGAAAACATTGAGGATTGATGACCCGGGAGAAGCAGCAAAAAGCTCCATATGGACAACGCTGGGGATTAAGAATGATAAGGATGAACCTGTTCAGGAGGGAGGACTTTTTAAGGCATTCCCATCAAAGGGTGACGAAAAAAATCACAGAGTGCAAACTTCACCGGCCTTGCAGGCAAATCCAGCGGCATTGTCTAGGTCCCTCAACTTTCATGAGTCCTCCTAA 1500 0.466 MSEAKDPAIKLFGKTIPLPEIPARSGDSVGAPLSSSGDIVADSIDQNHACSTNSSRDSYGNRDGEQQDTGKDDKMEDGAHVQSAEEFTNPDAALRAGEESITNSIEKEATTLKNLKSEEEQSETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSASHFRQITVSEALQNARTDLPNGVHHPSLKSNGTVLTFGSDMPLCESMASVLNLADKTMHNCTRNGFHKPEELKIPVPYAGGEKGNDHSNKSSVTSTKPIDDTNINRSQEQVMQNCQTFPPQVPYFPGTPWPFPWNPAQWSSPVPPTAFCPPGFTMPFYPAPAYWACTVSGNWNIPWLAQPSSPNSAAPSSGPNSPTLGKHSREENMLKSNDSGEEDEQRKENNKEKSLWVPKTLRIDDPGEAAKSSIWTTLGIKNDKDEPVQEGGLFKAFPSKGDEKNHRVQTSPALQANPAALSRSLNFHESS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1954 499 ProSiteProfiles Zinc finger Dof-type profile. 139 193 IPR003851 GO:0003677|GO:0006355
Glsi11g1954 499 Pfam Dof domain, zinc finger 136 193 IPR003851 GO:0003677|GO:0006355
Glsi11g1954 499 ProSitePatterns Zinc finger Dof-type signature. 141 177 IPR003851 GO:0003677|GO:0006355
Glsi11g1954 499 MobiDBLite consensus disorder prediction 110 137 - -
Glsi11g1954 499 MobiDBLite consensus disorder prediction 396 427 - -
Glsi11g1954 499 MobiDBLite consensus disorder prediction 376 395 - -
Glsi11g1954 499 PANTHER CYCLIC DOF FACTOR 2 1 499 IPR045174 GO:0003700|GO:0006355
Glsi11g1954 499 MobiDBLite consensus disorder prediction 280 296 - -
Glsi11g1954 499 MobiDBLite consensus disorder prediction 39 60 - -
Glsi11g1954 499 MobiDBLite consensus disorder prediction 111 137 - -
Glsi11g1954 499 MobiDBLite consensus disorder prediction 476 499 - -
Glsi11g1954 499 MobiDBLite consensus disorder prediction 447 499 - -
Glsi11g1954 499 MobiDBLite consensus disorder prediction 61 81 - -
Glsi11g1954 499 MobiDBLite consensus disorder prediction 13 92 - -
Glsi11g1954 499 MobiDBLite consensus disorder prediction 376 428 - -
Glsi11g1954 499 MobiDBLite consensus disorder prediction 275 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1954 Glsi-ChrGlsi11 12331494 12334417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1954 6 499 C2C2-Dof Transcription Factor Family AT5G39660 45.507 3.58e-120 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi11g1954 zf-Dof 3.1e-32 No_clan