Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1279 ATGTACTCAAATATTAGTTGTGGACAGGACCAGAAGTTGCAGTTCCCAGTTCCAATGGACCGATCCAGATGGAAACCCAACAACACTGAACCGGCTCCCAATTGCCCCCGTTGTGCTTCTTCCAACACCAAATTCTGTTACTACAACAACTACAGTTTATCCCAGCCCAGGTATTTCTGTAAAGCTTGTAGGCGCTACTGGACCAAAGGCGGCTTTCTTCGTAACGTCCCCGTCGGCGGTGGTTGCCGCAAAAGCCGCCGTCCTAAGACCTCCAGACACCACCTCAATATTTATACACGCAGCTTCGTCGGATCAAACTCCTGTTCCACTTCCCAGGAAGGAGATGATCGGTCAGCGGTTAATAAAGCCAGTGGGTCGGATATTGACATGGCCCTTGTGTTTGCCAAGTTCCTGAGCTCCGGTGATCAGGATTTCCAGAATGAGGCCGCCAATTGTTTGACGCCGGAAAGCGTTGAAACTAGGACCGATGCACCCGTACCGTTTGATCCCATCACGGATTCTTGTGATGGGGCGGCGGGGGTTCCTGAAAATTTTACTGAGCAGGGGTTGATGAGTGGAATTGAGCTGGAGTGGGAGGGTTTGTTAGGCGGCGATGAAGTGGTCCAAGATGTTTTCAGCTGGTCCGATGCTACGACGTCGTCTTCATCAGTTAGCTGGCAACCGCCCATGATGCAATTGCGGGATGACGATGAGGATGCTCAATTACCAATCAGTTCTCCGACAAACCTATTCAGCGAAGGTTGGAGTTGGAGTTGCTTTGATTTTTCAAATTTGCAAGTCTTCTCATCCACCCCTTAA 819 0.5018 MYSNISCGQDQKLQFPVPMDRSRWKPNNTEPAPNCPRCASSNTKFCYYNNYSLSQPRYFCKACRRYWTKGGFLRNVPVGGGCRKSRRPKTSRHHLNIYTRSFVGSNSCSTSQEGDDRSAVNKASGSDIDMALVFAKFLSSGDQDFQNEAANCLTPESVETRTDAPVPFDPITDSCDGAAGVPENFTEQGLMSGIELEWEGLLGGDEVVQDVFSWSDATTSSSSVSWQPPMMQLRDDDEDAQLPISSPTNLFSEGWSWSCFDFSNLQVFSSTP 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1279 272 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 163 IPR045174 GO:0003700|GO:0006355
Glsi10g1279 272 Pfam Dof domain, zinc finger 33 87 IPR003851 GO:0003677|GO:0006355
Glsi10g1279 272 ProSitePatterns Zinc finger Dof-type signature. 35 71 IPR003851 GO:0003677|GO:0006355
Glsi10g1279 272 ProSiteProfiles Zinc finger Dof-type profile. 33 87 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1279 Glsi-ChrGlsi10 8627205 8628023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1279 24 139 C2C2-Dof Transcription Factor Family AT3G52440 60.000 7.19e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi10g1279 zf-Dof 1.6e-31 No_clan