Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1168 ATGCCAAACCAGAGACCCATTTTGCAGAGCTCTTTCCTATTGTTACTTTTGCAGGTTTTAATCAATGTAGGTCCTGTGAGCTGTAAATCTACAATCGAGCCTTGCTCAAACTCGGACTCGTGCAATGCTCTGCTCGGCTACACTCTTTACACTGACCTAAAGGTCTCTGAGGTGGCTTCCCTATTTCAAATCGACCCTATTGCTCTTCTCACTGCCAATGCTATTGACATTTCGTACCCTGACGTAGAACACCACATTCTTCCTTCCCGACTCTTCCTTAAAATCCCCATTATCTGTTCATGTGTCGATGGAATTCGTAAATCGGTGTCCACCCATTACAAAACTCGGCCCTCTGATACTCTCTCATTGATTGCGGATTCAGTATATGGGGGTTTGGTGTCTGATGACCAGATTAGGGAGGCGAATTCCATAGCCGACCCTTCAGTACTGGATGTGGGTCAGAACCTTGTGGTGCCCCTTCCATGCACTTGCTTCAATGGGACCGATAACTCTTTGCCTGCAATTTACCTGTCGTACGTGGTGCAGCCAATTGATACTTTGCCTGCAATTGCCGCGAGTTATTCCACCACTCTTACTGATTTGATGAATGTCAATGCCATGGGGAGTACGGCTATCAGCGATGGAGATATTCTTGCTATTCCGATACCGGCTTGCGCGTCAGATTTTCCAAAATCTGCCGCTGATTATGGCTTGCTTGTCCCTAATGGAAGCTATGCCATTACAGCAAGTCACTGTGTGCAGTGTAGCTGTGGACCACGAAATCTAAATTTGTACTGTATGCCTGCTTCTCTGGCAGTTTCTTGTTCTAGCATGCAATGTAAAAACAGCAACCTTATGGTTGGGAATGTTACAGCGCAACAGAGTAGTGCTGGTTGCAATGTTACTTCTTGTAGTTATGATGGTTTTGTTAATGGCACAATAATAACAGCGTTGTCCGCATCTCTTCAGCCTCGATGCCCAGGGCCGCAGCTATTTCCCCCACTCATAGCTCCACCTACTGCCGTTCCCCGGATTTCAGAATTTGCACCATCACCATCACCTCAGTCAGAATTAGCTGGTCCAACATCCCCCAAACCTTCAGTGGTGCCTGCATCAGGGACATTTCCCGGATTCACCCCTGCAAATGGCCCTGGTAGTGCGTTGTCTTCTGGTGTTTCTGCTGCATGTTCCTTCATGAATCCCTTACCCACTCTGACATCTGCATTTGTGTTATTGTTCGTAAAGTTGTTGATCCCTATAGCATTGTAA 1269 0.4673 MPNQRPILQSSFLLLLLQVLINVGPVSCKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPIALLTANAIDISYPDVEHHILPSRLFLKIPIICSCVDGIRKSVSTHYKTRPSDTLSLIADSVYGGLVSDDQIREANSIADPSVLDVGQNLVVPLPCTCFNGTDNSLPAIYLSYVVQPIDTLPAIAASYSTTLTDLMNVNAMGSTAISDGDILAIPIPACASDFPKSAADYGLLVPNGSYAITASHCVQCSCGPRNLNLYCMPASLAVSCSSMQCKNSNLMVGNVTAQQSSAGCNVTSCSYDGFVNGTIITALSASLQPRCPGPQLFPPLIAPPTAVPRISEFAPSPSPQSELAGPTSPKPSVVPASGTFPGFTPANGPGSALSSGVSAACSFMNPLPTLTSAFVLLFVKLLIPIAL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1168 422 MobiDBLite consensus disorder prediction 347 372 - -
Glsi10g1168 422 CDD LysM 178 220 IPR018392 -
Glsi10g1168 422 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 13 330 - -
Glsi10g1168 422 Pfam LysM domain 113 159 IPR018392 -
Glsi10g1168 422 Pfam LysM domain 179 221 IPR018392 -
Glsi10g1168 422 ProSiteProfiles LysM domain profile. 111 158 IPR018392 -
Glsi10g1168 422 SMART LysM_2 112 159 IPR018392 -
Glsi10g1168 422 SMART LysM_2 178 221 IPR018392 -
Glsi10g1168 422 ProSiteProfiles LysM domain profile. 177 220 IPR018392 -
Glsi10g1168 422 Gene3D LysM domain 167 229 IPR036779 -
Glsi10g1168 422 CDD LysM 111 158 IPR018392 -
Glsi10g1168 422 Gene3D LysM domain 105 166 IPR036779 -
Glsi10g1168 422 SUPERFAMILY LysM domain 177 222 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1168 Glsi-ChrGlsi10 7869678 7872229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1168 29 421 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 67.848 0.0 541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1168 10 7869678 7872229 Glsi10g1168 10 7869678 7872229 ECH