Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0945 ATGTCACCGGATAATATTCCTGCAAAGCCAGCCACCAAAGATGAAAGCCAAGGTTCCGGTAGTCGGAAAGCCACTTCCACAAGACCACCAGAACAAGGCTTAAAGTGCCCACGATGTGACTCGCCAAACACCAAGTTCTGCTACTACAACAATTACAGCCTGACGCAGCCAAGGCATTTCTGCAAGACTTGTCGAAGATACTGGACAAAAGGTGGAGCTTTGCGTAACGTTCCAATAGGCGGTGGGTGCCGCAAGAACAAGAAGGTTAAATCATCATCCAGGCTCTCAACTGACTCCAAGGACTCTGTCTTGCCTTCAGAGCTTGGCGGCTTCAAGTTCTTTCATGGTCTTTCCCCTTCTGTGGATTTTCAGCTTGGTGGGTTGCCCTTCCCTAGACTGCCACATCACCCTCCAACCACTTCCGTCTATAACCACTTCTCTTCTTTTGGAGACGTTCCAGCCACCTCTGCTTCTGTCACAAGTGCTTCCTCTTTCAACCTTGATCCGTCTGGTAGCTCGAATTCTTTGATTAATTTTAATTTTCCATTTTCTTCTTCAACTGGAAGCGGATTTAATGGTGCAATTCAGGGCTTGAGCACCATGAACCTTCACAGTAGCCTTGCTTCGTCAATTGAATCATTGAGTTCTGTAAACCAGGACTTGCACTGGAAGATGCAGCAGCAGCGAGTAGCTATGCTGTTTGGTGGGGATACCCAGAAAGATAATAGCGTTTCACCGGTTAATCTTGAGAGCCAGACCCAGAAACCACAACCTATTTGGTTTCAGAACCTTGAGATTTCAAAGCCAGAGATTTTACCCGTTGGTAATTCGAGGAAAGAAGGCCCAAGTGGGGATACACCTACTGAGTGGTTCTTTGGGAATTCTTTTGCCTCAGTGACTCCTACGCCTACTACCAGTAGCGGTGGTAATGGCCATGATAATGCCAGCAACTGGAGTGGTGTCCATGCTTGGGGTGATATGCAGCAGCAATATAATGCTTTGCCCTAG 1008 0.4742 MSPDNIPAKPATKDESQGSGSRKATSTRPPEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKSSSRLSTDSKDSVLPSELGGFKFFHGLSPSVDFQLGGLPFPRLPHHPPTTSVYNHFSSFGDVPATSASVTSASSFNLDPSGSSNSLINFNFPFSSSTGSGFNGAIQGLSTMNLHSSLASSIESLSSVNQDLHWKMQQQRVAMLFGGDTQKDNSVSPVNLESQTQKPQPIWFQNLEISKPEILPVGNSRKEGPSGDTPTEWFFGNSFASVTPTPTTSSGGNGHDNASNWSGVHAWGDMQQQYNALP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0945 335 MobiDBLite consensus disorder prediction 301 320 - -
Glsi09g0945 335 ProSitePatterns Zinc finger Dof-type signature. 36 72 IPR003851 GO:0003677|GO:0006355
Glsi09g0945 335 MobiDBLite consensus disorder prediction 1 36 - -
Glsi09g0945 335 MobiDBLite consensus disorder prediction 81 101 - -
Glsi09g0945 335 ProSiteProfiles Zinc finger Dof-type profile. 34 88 IPR003851 GO:0003677|GO:0006355
Glsi09g0945 335 Pfam Dof domain, zinc finger 32 88 IPR003851 GO:0003677|GO:0006355
Glsi09g0945 335 MobiDBLite consensus disorder prediction 12 28 - -
Glsi09g0945 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 22 231 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0945 Glsi-ChrGlsi09 6580746 6581753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0945 5 335 C2C2-Dof Transcription Factor Family AT5G65590 40.462 9.96e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi09g0945 zf-Dof 1.3e-32 No_clan