Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0497 ATGCCGTCAGACTCCGGCGACAACCCCCGACCATCCAAACCACGAAACTCAGGAGGAGCTCCGCCACCAGAACAAGAGCACCTCCCATGCCCTCGCTGCGATTCCACCAACACCAAGTTTTGTTACTACAACAACTACAACTTCTCCCAGCCCCGCCACTTTTGCAAGTCTTGCCGCCGCTACTGGACTCATGGTGGGACACTTCGTGACATCCCAGTCGGAGGTGGCAGCCGCAAAAATGCGAAACGTTCCTGCAGTACTGCTTCTGCATCTTCCTCCATCACCGCAACTTCAGGTTCTACTCAGGACCACCCATTGCCTACAGCTTCTGTGTTTGTTCCGATCTCGGCCAACCAAGGAGCGTCCATGCCATTCGGCGTTACCGGCGGAGTTGAGAGTGATGTCAAAACAAATATGAATATGTGCGGAAGCTTCACCTCCTTGCTTAACAACACTACCCAAGGACCTGGCTTTCTGGCTCTAGGCGGGTTTGGAATTGGGCTTGGGCATGGGTTCGACGATATGGGATTTGGGAGTGGGAGAGGGGGTTGGCCTTTTCCGGGAATGGTCGATGGCTCTAACATTGGCGGCGGTGTTGGGGTTCAGAGTGTAGGGAATTCATGGCAGTTAGATAGTGGCGAAGGTGGGTTTGTTGGAGGAGACTGCTTCTCTTGGCCGGGGCTGGCGATTTCAACACGTGGAAATGGTCTGAAATGA 717 0.5411 MPSDSGDNPRPSKPRNSGGAPPPEQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSCSTASASSSITATSGSTQDHPLPTASVFVPISANQGASMPFGVTGGVESDVKTNMNMCGSFTSLLNNTTQGPGFLALGGFGIGLGHGFDDMGFGSGRGGWPFPGMVDGSNIGGGVGVQSVGNSWQLDSGEGGFVGGDCFSWPGLAISTRGNGLK 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0497 238 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677|GO:0006355
Glsi09g0497 238 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677|GO:0006355
Glsi09g0497 238 MobiDBLite consensus disorder prediction 69 105 - -
Glsi09g0497 238 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 21 155 IPR045174 GO:0003700|GO:0006355
Glsi09g0497 238 MobiDBLite consensus disorder prediction 1 29 - -
Glsi09g0497 238 MobiDBLite consensus disorder prediction 80 105 - -
Glsi09g0497 238 Pfam Dof domain, zinc finger 26 82 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0497 Glsi-ChrGlsi09 3436249 3436965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0497 1 238 C2C2-Dof Transcription Factor Family AT3G50410 50.388 8.68e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi09g0497 zf-Dof 3.2e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g0497 09 3436249 3436965 Glsi09g0497 09 3436249 3436965 ECH