Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1147 ATGGCAGGTCGAAAGCCAAAACCAATTTTGCCTGAGTGGAAAGGAGCTTTATTCAGCCTTCTCTGGCCTCGTCAAAGAACATTCGGCGCGCTCCCTATAACCCTCTGCAGAAAAGATATCAATTTTCGGCTTGAAAAGGCCATTACCAGGATGCCAAATCCAAAGCCCATATTGCATGGCACTTTCCTCTTGTTACTTTTGCAGGTTTTAATTAATGCAGCTCATGTGAGCTGCAAATCTACGATTGAGCCTTGCTCAAACTCTGATTCGTGCAATGCTCTTCTCGGATACACGCTCTACACTGACCTAAAGGTCTCTGAGGTGGCTTCCCTCTTTCAAATCGATCCTATTGCTCTTCTCACTGCCAATGCCATTGACATTTCTTACCCTGACGTAGAGCACCACATTCTTCCCTCTCGCCTCTTCCTCAAAGTCCCCATTACCTGTTCATGTGTTGATGGAATTCGCAAGTCGGTCTCGACCCATTACAAAACTCGGCCCTCTGATACTCTCTCGTCGATTGCAGATTCAATATATGGGGGTCTAGTGTCTGATGACCAGCTTAGGGAGGCAAATTCGATAACTGACCCTTCAGTACTGGACGCAGGTCAGAGCCTTGTGGTGCCGCTTCCATGCACTTGCTTTAATGGGACCGATAACTCTTTGCCTGCAATCTACCTGTCGTATGTGGTGCGGCCAATTGATTCTTTGGCTGCAATTGCTGCGAGATATTTCACTACTCTTACCGATTTGATGAATGTCAATGCCATGGGGAGTACAGCTATCACCGACGGTGATATTCTCTCCATACCTATACCAGCTTGCTCATCAAATTTCCCGAAATATGCCTCTGATTATGGCTTGCTTGTCCCTAATGGAAGCTATACCATTTCAGCAAGTCACTGTGTGCAATGTAGCTGTGGACCACGAAATTTAAATTTATACTGTATGCCTGCTTCTCTGGCTGTTTCTTGTTCCAGCATGCAATGTAAAAACAGCAATCTTATGCTCGGGAATGTTACAGTTCAACAGCGTAGTTCTGGTTGCAATGTTGCGTCTTGTAGTTATGATGGTTTTGTTAATGGCACCATCAGAACCGCGTTGTCTATATCTCTTCAACCTCGTTGCCCAGGACCGCAGCAATTTCCTCCTCTGATAGCGCCGCCTACTTCTGTTACTAGGGATTCAGTATTTGCACCAGCGCCAGCACCTCTGTCAGATGGATCCGGTCCATTAACACCCAAATCTTCCGTGATGCCAGCAACAGGATCGTTTCCAGGTTTCCCACCTGCAAATGGCCCTATTAGTGGGATTACTTCCGGTGTTTCTGCTGCTTGCTCCATAGTGAATCCATTACCCACTTTGACGTCTGCTTTTGTGTTATTGGTTGTCAAGTTGATGATCTCTGTGGCATTGTAA 1419 0.4623 MAGRKPKPILPEWKGALFSLLWPRQRTFGALPITLCRKDINFRLEKAITRMPNPKPILHGTFLLLLLQVLINAAHVSCKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPIALLTANAIDISYPDVEHHILPSRLFLKVPITCSCVDGIRKSVSTHYKTRPSDTLSSIADSIYGGLVSDDQLREANSITDPSVLDAGQSLVVPLPCTCFNGTDNSLPAIYLSYVVRPIDSLAAIAARYFTTLTDLMNVNAMGSTAITDGDILSIPIPACSSNFPKYASDYGLLVPNGSYTISASHCVQCSCGPRNLNLYCMPASLAVSCSSMQCKNSNLMLGNVTVQQRSSGCNVASCSYDGFVNGTIRTALSISLQPRCPGPQQFPPLIAPPTSVTRDSVFAPAPAPLSDGSGPLTPKSSVMPATGSFPGFPPANGPISGITSGVSAACSIVNPLPTLTSAFVLLVVKLMISVAL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1147 472 ProSiteProfiles LysM domain profile. 161 208 IPR018392 -
Glsi08g1147 472 Pfam LysM domain 229 271 IPR018392 -
Glsi08g1147 472 Pfam LysM domain 163 209 IPR018392 -
Glsi08g1147 472 Gene3D LysM domain 155 215 IPR036779 -
Glsi08g1147 472 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 62 380 - -
Glsi08g1147 472 SUPERFAMILY LysM domain 227 272 IPR036779 -
Glsi08g1147 472 ProSiteProfiles LysM domain profile. 227 270 IPR018392 -
Glsi08g1147 472 MobiDBLite consensus disorder prediction 397 416 - -
Glsi08g1147 472 CDD LysM 228 270 IPR018392 -
Glsi08g1147 472 CDD LysM 161 208 IPR018392 -
Glsi08g1147 472 Gene3D LysM domain 216 280 IPR036779 -
Glsi08g1147 472 SMART LysM_2 162 209 IPR018392 -
Glsi08g1147 472 SMART LysM_2 228 271 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1147 Glsi-ChrGlsi08 8387628 8391234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1147 55 447 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 68.101 0.0 547
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1147 08 8387628 8391234 Glsi08g1147 08 8387628 8391234 ECH