Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1010 ATGTTGCAGTTCCCACCACCGCCCATGGACTCGTCAAGGTGGAAACCCAACATTGAGCTAGCTCCCAATTGCCCTCGTTGTGCCTCCTCTAACACTAAATTCTGTTACTTCAACAACTACAACTTGTCCCAACCCAGATACTTCTGTAAAGAATGTAGGCGCTACTGGACTAAAGGCGGTTCTTTGCGCAACGTTCCCGTCGGCGGCGGTTGTCGCAAAACTCGACGTCCAAAGTCCTCCACGCATCCCCAAACTTCACGTGCTTCAGTGAATTATACGGCCAGATCCAGTGGCATTTCCGGTTCTGGGGTTACGAATAAACCCAACGAAGTCAATTGCTCCGATATTGACATGGCCGTCCTGTTCGCCAGGTTCGTGAACCAATACTCCGAGAATGATGCGAATGGGTCATCATCGTCCAACTTATCAACTTCTTTGCGACCGGAAGGGTGGCTTCCCCGAGAAGAGAGCTTTGAGGGGGAGGAATTGGGTGAAATTGAGCTGGAGGGCTTGTTGGGTGGGGATGAAGCGGTCCAAGATGTTTTCTGGTCTGATGACAGGACGTCGTCTTCACTTACTTGGCAATTGCAGCAGAAGTTGGAGTATTCGATGGCGATGCCGTTCAATCGGGATGATCAATTGCCAATTACTTCTCGCACGAACAATTTAATAAACGATGGTTGGAATTGGAGTTCCTTTGATGTTTCAACGTTGGAGGCCTTCTCGCCAAAACCTTAA 738 0.4932 MLQFPPPPMDSSRWKPNIELAPNCPRCASSNTKFCYFNNYNLSQPRYFCKECRRYWTKGGSLRNVPVGGGCRKTRRPKSSTHPQTSRASVNYTARSSGISGSGVTNKPNEVNCSDIDMAVLFARFVNQYSENDANGSSSSNLSTSLRPEGWLPREESFEGEELGEIELEGLLGGDEAVQDVFWSDDRTSSSLTWQLQQKLEYSMAMPFNRDDQLPITSRTNNLINDGWNWSSFDVSTLEAFSPKP 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1010 245 Pfam Dof domain, zinc finger 23 76 IPR003851 GO:0003677|GO:0006355
Glsi08g1010 245 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 156 IPR045174 GO:0003700|GO:0006355
Glsi08g1010 245 MobiDBLite consensus disorder prediction 67 106 - -
Glsi08g1010 245 ProSiteProfiles Zinc finger Dof-type profile. 22 76 IPR003851 GO:0003677|GO:0006355
Glsi08g1010 245 MobiDBLite consensus disorder prediction 81 106 - -
Glsi08g1010 245 ProSitePatterns Zinc finger Dof-type signature. 24 60 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1010 Glsi-ChrGlsi08 7472878 7473615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1010 3 236 C2C2-Dof Transcription Factor Family AT1G21340 39.300 9.47e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi08g1010 zf-Dof 1.5e-31 No_clan