Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1768 ATGGTTTTTTCCTCCATCCCAGCTTATCTTGATCCAGCCAACTGGCAGCAACAGCAACCCAATCATCACACCGGCAGTAGTGACCCAAGCTCTCATCGGCAGTTTCTTCAATCGCCGCCGCCACTGCTTCCGCCACCACCCACGCAATCTCATGGAGCTGGGGGTGCTGGCTCGATCAGGCCGAGGTCGATGGCTGATCGAGCTCGGATCGCCAACAAACCAATGCCAGAGGCTGCACTGAAATGCCCACGATGTGATTCCACGAACACCAAATTTTGCTACTACAACAATTACAACCTCGATCAACCCCGCCACTTCTGCAAGGCCTGTAGAAGATACTGGACCAAAGGCGGGTCCTTGAGGAGCGTGCCCGTCGGAGGCGGTTGCCGGAGGAACAAGAGAAGCAAAGGAAGCAGCAGCTCCAAGTCGCCGGTGGGCTCCGATCACCAAACGGGGAGTGCCAATTCAACCAACTCAGTTTCCTCTAACAGTGGCTCTGCTGGTGGCATAGTAGGCCTCGCGCCTCAGGTACCATCACTGAGATTCATGGCTCCAGTACATCATCAACTTGTTGATTTTGCAGCTGAAGACATGGGGTTAAACTATGGCCTAAGTTACAGCGCGATTTCAGCACCAATGGGAGGAGTAGGTGACTTGAATTTCCAGATAGGAAGCGCTTTAGGCGATGGTCACCGCGGCGGCAGTGGCAGTGGGTCTCTCTTATTTGCCGCAGGTTTGGAGCAATGGCGGGTGCCACAAACACAGCAATTTCCCTTCTTGTCTGGTTTGGAAGCATCAACTGGACTGTACCCATTTGAAGGTGTTGCCGAGGCGTCGGGATACAGCGCAACCGGCGGGGTGAGTTTCCCGCCCAAGGTGTCTGCTTCTGCGGTGATGACTCAGCTGGCTTCAGTGAAAATGGAAGATAATCAGGAGCTGAATTTGTCAAGGCAGTTCTTGGGAATCAATAACACAGCAAGTGAGCAATATTGGAGTGCTGGTGGTACTAATCCTGCTTGGACGGATTTTTCTGGATTTAGCTCTCCTTCCACTACTAGTAATCCACTATAG 1071 0.5275 MVFSSIPAYLDPANWQQQQPNHHTGSSDPSSHRQFLQSPPPLLPPPPTQSHGAGGAGSIRPRSMADRARIANKPMPEAALKCPRCDSTNTKFCYYNNYNLDQPRHFCKACRRYWTKGGSLRSVPVGGGCRRNKRSKGSSSSKSPVGSDHQTGSANSTNSVSSNSGSAGGIVGLAPQVPSLRFMAPVHHQLVDFAAEDMGLNYGLSYSAISAPMGGVGDLNFQIGSALGDGHRGGSGSGSLLFAAGLEQWRVPQTQQFPFLSGLEASTGLYPFEGVAEASGYSATGGVSFPPKVSASAVMTQLASVKMEDNQELNLSRQFLGINNTASEQYWSAGGTNPAWTDFSGFSSPSTTSNPL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1768 356 ProSitePatterns Zinc finger Dof-type signature. 82 118 IPR003851 GO:0003677|GO:0006355
Glsi07g1768 356 MobiDBLite consensus disorder prediction 124 165 - -
Glsi07g1768 356 MobiDBLite consensus disorder prediction 10 37 - -
Glsi07g1768 356 MobiDBLite consensus disorder prediction 10 60 - -
Glsi07g1768 356 ProSiteProfiles Zinc finger Dof-type profile. 80 134 IPR003851 GO:0003677|GO:0006355
Glsi07g1768 356 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 58 175 IPR045174 GO:0003700|GO:0006355
Glsi07g1768 356 MobiDBLite consensus disorder prediction 138 165 - -
Glsi07g1768 356 Pfam Dof domain, zinc finger 79 134 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1768 Glsi-ChrGlsi07 59067228 59068493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1768 17 344 C2C2-Dof Transcription Factor Family AT3G55370 39.769 2.74e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi07g1768 zf-Dof 8.6e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g1730 06 64104608 64105883 Glsi07g1768 07 59067228 59068493 PCT