Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0705 ATGGAAGGGATAGCTCCAAATTCATTTACAAAGCCAGTGTTAGAGAAGAAGGCAAGACCACAAGAGCAATTGAATTGTCCAAGGTGCAATTCAACCAACACAAAGTTCTGCTATTACAATAACTACAGCCTCACACAACCCAGGTACTTCTGCAAGACTTGCAGAAGGTATTGGACAGAAGGTGGATCCCTCAGAAACATCCCGGTTGGAGGTGGTTCTAGAAAGAACAAGAAGATCACCAACGCCTCATCATCGTCATCATCATCTTCATCAAAGGTTCCTGACTTAAACCCACCAAGCCATCAAAACCCTACTACAATGCAAGGAGGCCAAGATCTTAATCTGGGATATGGTCAATTTTATGTTGAAAACTCTTCTTCTGCTGCTCCAACTAGTTCTCTTTCAGCTCTTGAGCTTCTAAGGACTGGCATGGCTTCTAGGGGTTTGAATCATCCTTATGCTCCTTCATTGATGCCAAACTCATATAGCCTTTACCCTTCATCTGCGTTTCCCATGCAAGAAAGTACTAAACCAAACCTTGGATTCTCAGTTGATGGGCTTGGAAATAGATCATATAATTATGATGAAGTCCAAGGGAATAATAATGGTGGGAGGGTTTTGCTTCCTTTTGGAGATGTCAAGCAGCTTTCATCAGGCACAGAAGTAGTGGAACAAAACAAAGAACAAGGAAATTCAACTGGGTTTTGGACGGGAATGATTGGCGAAGGATCATGGTAA 738 0.4241 MEGIAPNSFTKPVLEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKKITNASSSSSSSSSKVPDLNPPSHQNPTTMQGGQDLNLGYGQFYVENSSSAAPTSSLSALELLRTGMASRGLNHPYAPSLMPNSYSLYPSSAFPMQESTKPNLGFSVDGLGNRSYNYDEVQGNNNGGRVLLPFGDVKQLSSGTEVVEQNKEQGNSTGFWTGMIGEGSW 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0705 245 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Glsi07g0705 245 MobiDBLite consensus disorder prediction 65 112 - -
Glsi07g0705 245 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Glsi07g0705 245 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 165 IPR045174 GO:0003700|GO:0006355
Glsi07g0705 245 MobiDBLite consensus disorder prediction 76 112 - -
Glsi07g0705 245 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Glsi07g0705 245 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0705 Glsi-ChrGlsi07 6186979 6187716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0705 16 245 C2C2-Dof Transcription Factor Family AT3G61850 47.388 1.40e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi07g0705 zf-Dof 2.4e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g0705 07 6186979 6187716 Glsi07g0705 07 6186979 6187716 ECH