Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0292 ATGAGTTTTGTTAGGGTGGTTCTCGGCGTAATAATCACCTCTCTTGCTGCTACATCAGCAACTCAATTCCAATGCGGAGGCGAATCTACGTGTCTATCCCTGCTTGGTTACAAAGCCCCTAAACGCACCACTTTGGGCGCCATCCAAACCCTCTTCAACGTGACTTACCTGGCTGACATTCTCGCCGTGAACGACCTCCCTGAGTCCACCCCACAGGACGATACGGTGGAGGGGAAGCAGGTAATTCGAATACCATTGGAGTGCCAGTGCGATGATTATTCCGGTCTGACAAAAATCCCCCTCAAATACAAGATTGTGCCGAATGATCACACGCTATCCATTGTAGCGAAGTATGTGTTCTCGGATTTGGTGGATTACACTGATATCGAAAACGCAAATAAAAATGTAGTCCCTACCAATCTAACGGTGGGGCAGGAGGTGGAGATTCCACTGCCTTGCTGGTGCGGCCCAGTGAAAGGGAGGAGCGTGGTTCATTGTGGGATAACGCTGGAATACGGGAGCACCTTGGAAGATATAGCTCAGGAGTACGGTAGCACACCTGATGCCATCCTGGCTGCCAACTACCTTACTGATCCCACCCAACTTCAGACCAATCATGCTTTGGATATTCCACTCACAGCTTGTTCCTCGATGGTGAGAAATGACTCCTTGGATTTCCCTTTGCTTGTTCCAAATGGCACTTATGTCTACACTGCAAATGGCTGTGTGAGGTGCAAGTGTGATGCCGCCAAAAACTGGATATTACAGTGCGAGCCATCCCAGCTTAAACCAACCAACTGGTCTACTTGCCCATCAATGCAATGCCACAGTTCAAGTAACATGTCTATTGGTAACACCACACCCTCTGGTTCCCGCAATCTCACTGTCTGCGCCTATGCTGGTTATGGAAGTCAAACTATCTTCACTACTCTTGCAACAGAGTCCATTCCTCCTGATAACTACAGGAGGGTCTATGAGGATGGCAGGATTGCTCACAGTATGGTCCATAAACTTGATTATTTTGAACTGCTGGCTTCAGGAGGAAGAGAAGTTGACAGAAAAAGGAAGCAAAAGAAACTAATATGGGAAATTGGAGGTGGTACAGTGGCTTCCACTGTATATCACAGAGCAAAAGGAAACAGCAAAGATGGCAAGACAAACCATGAAATGCAGATATTTAGCTTTGAAAGCATTGCTAATGCCGCAGACAATTTTTCAGTTGCAAACAAGTTAGGAGAGGGTGGCTTTGGACCTGTTTATAAGGGGAAACTGCCTGATGGACAGGAAATAGCAATAAAGAGACTTTCCAGTAAATCGGGGCAAGGATTGTTGATTCATGCTTTGTCTGAAACAGATTCTGAAAAAAAGAACATAATAACTTGGGAAGAAAGATTGAGCATCATTCAAGGGATTGCTCAAGGATTGGTTTATCTCCATCATTATTCAAGATTAAAAGTGATTCACCGAGATTTGAAAGCTAGCAACATATTACTTGATCATGAGATGAACCCAAAAATAGGTGACTTTGGTATGGCAAGAATATTTGAGTTGAAAGGAATAGAAGAGAACACAAAAAGAATTGTTGGAACATAG 1593 0.447 MSFVRVVLGVIITSLAATSATQFQCGGESTCLSLLGYKAPKRTTLGAIQTLFNVTYLADILAVNDLPESTPQDDTVEGKQVIRIPLECQCDDYSGLTKIPLKYKIVPNDHTLSIVAKYVFSDLVDYTDIENANKNVVPTNLTVGQEVEIPLPCWCGPVKGRSVVHCGITLEYGSTLEDIAQEYGSTPDAILAANYLTDPTQLQTNHALDIPLTACSSMVRNDSLDFPLLVPNGTYVYTANGCVRCKCDAAKNWILQCEPSQLKPTNWSTCPSMQCHSSSNMSIGNTTPSGSRNLTVCAYAGYGSQTIFTTLATESIPPDNYRRVYEDGRIAHSMVHKLDYFELLASGGREVDRKRKQKKLIWEIGGGTVASTVYHRAKGNSKDGKTNHEMQIFSFESIANAADNFSVANKLGEGGFGPVYKGKLPDGQEIAIKRLSSKSGQGLLIHALSETDSEKKNIITWEERLSIIQGIAQGLVYLHHYSRLKVIHRDLKASNILLDHEMNPKIGDFGMARIFELKGIEENTKRIVGT 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0292 530 Pfam Protein kinase domain 455 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g0292 530 ProSiteProfiles LysM domain profile. 166 210 IPR018392 -
Glsi07g0292 530 Gene3D Transferase(Phosphotransferase) domain 1 456 530 - -
Glsi07g0292 530 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Glsi07g0292 530 ProSiteProfiles Protein kinase domain profile. 338 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g0292 530 Gene3D LysM domain 168 220 IPR036779 -
Glsi07g0292 530 SMART tyrkin_6 405 527 IPR020635 GO:0004713|GO:0006468
Glsi07g0292 530 FunFam Os07g0541700 protein 446 530 - -
Glsi07g0292 530 CDD LysM 173 203 IPR018392 -
Glsi07g0292 530 Gene3D Phosphorylase Kinase; domain 1 378 455 - -
Glsi07g0292 530 SUPERFAMILY Protein kinase-like (PK-like) 386 530 IPR011009 -
Glsi07g0292 530 ProSiteProfiles LysM domain profile. 101 149 IPR018392 -
Glsi07g0292 530 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 255 443 - -
Glsi07g0292 530 SMART LysM_2 167 211 IPR018392 -
Glsi07g0292 530 SMART LysM_2 102 150 IPR018392 -
Glsi07g0292 530 Pfam LysM domain 103 150 IPR018392 -
Glsi07g0292 530 Pfam LysM domain 169 211 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0292 Glsi-ChrGlsi07 1968685 1972066 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0292 7 321 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 42.025 7.70e-76 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi07g0292 Pkinase 2.5e-14 CL0016