Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0290 ATGGGTTTTGTTAGGGTGGTTCTCGGCGTAATACTCACCTCTCTTGCTGCTACATCAGCAGCTGGATTCCACTGCGATGCAGGCGGATCTACGTGTCGATCCCTGGTTGGTTACAGAGCCCCAATCCCCACCACTTTGGGCACCGTCCAAACCCTCTTCAACGTGACTCACCTGGCCGACATTCTCGCCGTGAACGGCCTCCCTGAGTCCACCCCACGGGACGCATGGAAGGAGGGGGGGCAGGTAATTCGAATCCCGTTGGAGTGCCAGTGCTATTCTGGCACAAACGGTTATTTCGGTCTGACCAAAAACCCGCCCAAACACAAGATTGTGGCGAATGACACGCTGTACCATATAGCGAGGTATCTGTTCTGGGATTTGGTGAATTACACTCAACTCGAAGACGCAAATAAAAATTTAGTCCCTCTCGATCTAAAGGTGGGGCAGGAGGTGGAGATTCCACTGCCTTGCGGGTGCGGCCCGGTGAATGGGAGGAGCGTGGTTCATTACGGGATGGCGCTGGAATCCGGGCTCCCTTTGGACTATATAGCTCAGCAGTACGGCAGTCCACCTGATGCCATCTTGGCTGCCAACCGCCTTGATGATCCCACCCAAATTCAGACCTCTCAGGCTCTGGATTTTCCCCTCCCAGCTTGTTCCTCGATGGTGAGAAATGACTCCTTGGATTTCCCTTTGCTTGTTCCAAATGGCACTTATGTCTACACTGCAAATGGCTGTGTGAGGTGCAACTGTGATGCCGCCAAAAACTGGATATTACAGTGCGAGCCATCTCACCTTAAACCAACCAACTGGTCTACTTGCCCATCAATGCAATGCCACAGTTCAAGTAACATGTCCGTTGGTAACACCATACGCTCTGGTTCCCACAATATCACAGTCTGCGCCTATGCTGGTTATGGAAGTCAAACTATCTTCACTACTCTTGCAACAGAGTCCATTCCTCCTGATAACTCCAGGAGGGTCTATGAGGATGGAAAGATTGATCACATTGACAGAAAAAGGAAGCAAAAGAAACTAATATGGGAAATAGGAGGCGGTACAGTGGCTTCCACTGTATATCACAAAGCGAAAGGAAACAGCAAAGATGGCAAGAAAAACCATGAAATGCAGATATACAGCTTTGAAAGCATTGCTAATGCCACGGACAATTTTTCAGTTGCAAACAAGTTAGGAGAGGGTGGCTTTGGACCTGTTTATAAGGTCTACCTGATTTGTGGATTCCCAGAGAATATCTTGAGAAATGGATGCCATCAAAGCCAAGACGATGACTTCCAAGGACAAAATCTCACACGTTGGGAGAAATTGACCTCGACTTCGGAGGGATACGAGCTGTTTTTCAGGTCTATCTCTTATGATTTCAGTAAGATACGACGTTACCTGGTACTATCTGCTTCTGGAAGGGTTCCACATTGGATTGGCAACCCACTTGAAGCTCATGAGTCTGTCGGAAAGCTTACAATTGACGATTATGGAAACTTCAAAATTCTATACGACCGGGACGTCTCTGACTCTCTGATTATATACTCTTCTGAAGCAACGGAGAAGATGAATGCCAGTGCCACTTTACTCAACAATGGCAACTTAGTACTCCGCGAAATGAATTCAGATGGTTCTGTAAAACGAGTTCTCTGGCAAAGTTTTGACCACCCACTGTACGTCCTCTTACCAGAAATGAGATTGGGATTCAACAAAGCAACTGGGGAAATATGGAACTTGACATCATGGATAGGACCAAACACGCCTGTGTTGAGTTCCTTCACTCTTGGAATGGACCCCGACAATACTAAACAATTGGTCATTTGGTGGCGAAGGAAAGTTTACTGGACTAGCGGGCCACTGATTGACGGGAGTTTCAGCAATTTACAGACAACGTTTGGCCGATACAACTTGTTTTTCTCGTACTTTTCAGACGAGAATGAAACATACGTCACTTATTCCACGAACTCCACTGAAGCTCCTTTCATTATGTTGAATTCTTTGGGTCGACTAATTGGCCAAGCCTCTGTCTCTTGCAACGGTCATGACAACCCTGCACTTGTTGGAGGATGTGTGCCTCTGAAACCCCCACACTGCAGGAACCCCGAAACCTATGTGTCAATGGAAGATTTTAAATATGGTAATATATCACAAGAGGGGCACAAGAGCCAGGAAACAGAGAATCTTTCTCTCTATGATTGTGGCGTCATGTGTTTGAATAATTGCTCATGTGTTGCCTATGCTGCTACAACCAGGGATGGTACTGGCTGCGAGATGTGGAGTAACGAGACTCAATTTGTGCATTTTGTGGAATCGTCTCTTGGGCGACCAATTTACTTCATCTCAGATAATCCCAAAGGAAAATCCAAGGATGTTAAACATACACAAAGGAGGAAACTATTGGTCGCGATTGTGATCGGAGGAGCTCTAATGATACTCCTCATAGCATCCTTCATATGCCGTGTATTGCAGAGAAAACGCAGAATTAAAGATATTGAGATTTAG 2502 0.4648 MGFVRVVLGVILTSLAATSAAGFHCDAGGSTCRSLVGYRAPIPTTLGTVQTLFNVTHLADILAVNGLPESTPRDAWKEGGQVIRIPLECQCYSGTNGYFGLTKNPPKHKIVANDTLYHIARYLFWDLVNYTQLEDANKNLVPLDLKVGQEVEIPLPCGCGPVNGRSVVHYGMALESGLPLDYIAQQYGSPPDAILAANRLDDPTQIQTSQALDFPLPACSSMVRNDSLDFPLLVPNGTYVYTANGCVRCNCDAAKNWILQCEPSHLKPTNWSTCPSMQCHSSSNMSVGNTIRSGSHNITVCAYAGYGSQTIFTTLATESIPPDNSRRVYEDGKIDHIDRKRKQKKLIWEIGGGTVASTVYHKAKGNSKDGKKNHEMQIYSFESIANATDNFSVANKLGEGGFGPVYKVYLICGFPENILRNGCHQSQDDDFQGQNLTRWEKLTSTSEGYELFFRSISYDFSKIRRYLVLSASGRVPHWIGNPLEAHESVGKLTIDDYGNFKILYDRDVSDSLIIYSSEATEKMNASATLLNNGNLVLREMNSDGSVKRVLWQSFDHPLYVLLPEMRLGFNKATGEIWNLTSWIGPNTPVLSSFTLGMDPDNTKQLVIWWRRKVYWTSGPLIDGSFSNLQTTFGRYNLFFSYFSDENETYVTYSTNSTEAPFIMLNSLGRLIGQASVSCNGHDNPALVGGCVPLKPPHCRNPETYVSMEDFKYGNISQEGHKSQETENLSLYDCGVMCLNNCSCVAYAATTRDGTGCEMWSNETQFVHFVESSLGRPIYFISDNPKGKSKDVKHTQRRKLLVAIVIGGALMILLIASFICRVLQRKRRIKDIEI 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0290 833 Pfam LysM domain 182 212 IPR018392 -
Glsi07g0290 833 Pfam LysM domain 108 154 IPR018392 -
Glsi07g0290 833 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 244 415 - -
Glsi07g0290 833 Pfam D-mannose binding lectin 481 582 IPR001480 -
Glsi07g0290 833 Pfam PAN-like domain 725 762 IPR003609 -
Glsi07g0290 833 ProSiteProfiles Bulb-type lectin domain profile. 427 550 IPR001480 -
Glsi07g0290 833 Gene3D LysM domain 101 158 IPR036779 -
Glsi07g0290 833 SMART LysM_2 107 154 IPR018392 -
Glsi07g0290 833 SMART LysM_2 180 215 IPR018392 -
Glsi07g0290 833 SMART blect_4 427 557 IPR001480 -
Glsi07g0290 833 SUPERFAMILY Protein kinase-like (PK-like) 374 411 IPR011009 -
Glsi07g0290 833 SUPERFAMILY alpha-D-mannose-specific plant lectins 487 619 IPR036426 -
Glsi07g0290 833 Gene3D LysM domain 176 224 IPR036779 -
Glsi07g0290 833 CDD LysM 108 153 IPR018392 -
Glsi07g0290 833 Gene3D Phosphorylase Kinase; domain 1 353 428 - -
Glsi07g0290 833 Gene3D - 429 554 IPR036426 -
Glsi07g0290 833 ProSiteProfiles PAN/Apple domain profile. 698 782 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0290 Glsi-ChrGlsi07 1936054 1947833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0290 6 324 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 41.667 3.43e-72 239